Pantoea species PSNIH2 |
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Putative Pantoea species PSNIH2 RM systems
Ref: Conlan,S. et al. Sci Transl Med 6 (254), 254RA126 (2014)
REBASE ref # 18840
| Sequence length: | GenBank #: | |
| Chromosome: | 4,271,053 bp | CP009866 |
| plasmid pKPC-56a: | 54,000 bp | CP009867 |
| plasmid pPSP-100: | 165,878 bp | CP009868 |
| plasmid pPSP-75c: | 378,808 bp | CP009869 |
REBASE acronym: PspNIH2
Org_num: 14187
All begin PSNIH2_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1475 | integrase | |||
| 1480 | R | Opr2777ORF1135P (98% identity) | PspNIH2ORF1500P | |
| 1485 | 166 aa hypothetical protein | |||
| 1490 | S | S.Sal5466ORF2360P (48% identity) | S1.PspNIH2ORF1500P | |
| 1495 | S | S.Eho233ORF21485P (34% identity) | S2.PspNIH2ORF1500P | |
| 1500 | M | M.CspC21ORF4515P (99% identity) | M.PspNIH2ORF1500P | |
| 1505 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5565 | 535 aa hypothetical protein | |||
| 5570 | M | M.Pca22759DcmP (99% identity) | CCWGG | M.PspNIH2DcmP |
| 5575 | 240 aa hypothetical protein | |||
| 5580 | V | V.Pca22759DcmP (100% identity) | V.PspNIH2DcmP | |
| 5585 | multidrug DMT transporter | |||
| 18925 | DamX | |||
| 18930 | M | M.Pca22759DamP (100% identity) | GATC | M.PspNIH2Dam |
| 18935 | ribulose-phosphate 3-epimerase | |||
| plasmid pKPC-56a | ||||
| 19765 | transposase | |||
| 19770 | R | YpsR1ORFAP (99% identity) | CCWGG | PspNIH2ORF19775P |
| 19775 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.PspNIH2ORF19775P |
| 19780 | transposase, IS1 family protein | |||
| plasmid pPSP-100 | ||||
| 20215 | 149 aa hypothetical protein | |||
| 20220 | M | M.YrupYR1ORFAP (83% identity) | M.PspNIH2ORF20220P | |
| 20225 | transposase | |||
| 20840 | 143 aa hypothetical protein | |||
| 20845 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.PspNIH2ORF20845P |
| 20850 | 100 aa hypothetical protein | |||
| plasmid pPSP-75c | ||||
| 21350 | 203 aa hypothetical protein | |||
| 21355 | M | M.SenZC055ORF24890P (100% identity) | M.PspNIH2ORF21355P | |
| 21360 | 102 aa hypothetical protein | |||
| 21770 | 439 aa hypothetical protein | |||
| ??? | M | M.SenZC055ORF26240P (100% identity) | CCWGG | M.PspNIH2ORF21775P |
| 21780 | nuclease | |||
| 22930 | 273 aa hypothetical protein | |||
| 20995 | M | M.LspNIH3ORF24985P (100% identity) | M1.PspNIH2ORF20995P | |
| 21000 | DNA-binding protein | |||