Helicobacter macacae MIT 99-5501 |
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Putative Helicobacter macacae MIT 99-5501 RM systems
Ref: Shen,Z. et al. Genome Announc 2 (5), e00857-14 (2014)
REBASE ref # 18258
Contig set: 2,358,757 bp
GenBank #: AZJI00000000 (NZ_AZJI00000000)
REBASE acronym: Hma5501
Org_num: 13900
All begin HMPREF2086_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1456 | 697 aa hypothetical protein | |||
| 1457 | R | 174 aa hypothetical protein | Hma5501ORF1464P | |
| 1458 | 77 aa hypothetical protein | |||
| 1459 | 119 aa hypothetical protein | |||
| 1460 | 795 aa hypothetical protein | |||
| 1461 | S | S.Csp6871ORF50P (42% identity) | S.Hma5501ORF1464P | |
| 1462 | 165 aa hypothetical protein | |||
| 1463 | 374 aa hypothetical protein | |||
| 1464 | M | M.Hty6810ORF3915P (59% identity) | M.Hma5501ORF1464P | |
| 1465 | elongation factor P | |||
| 333 | 80 aa hypothetical protein | |||
| 334 | M | M.Hpu13156I (72% identity) | M.Hma5501ORF334P | |
| 335 | 42 aa hypothetical protein | |||
| 336 | 343 aa hypothetical protein | |||
| 337 | 109 aa hypothetical protein | |||
| 338 | S | S.Csp7795ORF1668P (36% identity) | S.Hma5501ORF334P | |
| 339 | 739 aa hypothetical protein | |||
| 340 | 448 aa hypothetical protein | |||
| 341 | R | CcoP3O1ORF2595P (45% identity) | Hma5501ORF334P | |
| 342 | 468 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1501 | 638 aa hypothetical protein | |||
| 1502 | M | M.PspSl1ORF20185P (41% identity) | M.Hma5501ORF1502P | |
| 1503 | 205 aa hypothetical protein | |||
| 1502 | 282 aa hypothetical protein | |||
| 1503 | R | AcrS202ORF1300P (16% identity) | Hma5501ORF1503P | |
| 1504 | 458 aa hypothetical protein | |||
| 1504 | 458 aa hypothetical protein | |||
| 1505 | R | HpyP005VIIIP (91% identity) | CGWCG | Hma5501ORF1506P |
| 1506 | M | M.HpyJ05ORF7285P (92% identity) | CGWCG | M.Hma5501ORF1506P |
| 1507 | 545 aa hypothetical protein | |||
| 1054 | 402 aa hypothetical protein | |||
| 1055 | R | Hap1501ORF4500P (62% identity) | RGCGCY | Hma5501ORF1056P |
| 1056 | M | M.Hap1501ORF4500P (67% identity) | RGCGCY | M.Hma5501ORF1056P |
| 1057 | 5-methyltetrahydropteroyltriglutamate- | |||
| 1542 | 1009 aa hypothetical protein | |||
| 1543 | RM | HciP01DORFEP (43% identity) | Hma5501ORF1543P | |
| 1544 | 575 aa hypothetical protein | |||
| 682 | 974 aa hypothetical protein | |||
| 683 | M | M.Hpu13156II (62% identity) | GATATC | M.Hma5501ORF683P |
| 684 | R | Hpu13156IIP (82% identity) | GATATC | Hma5501ORF683P |
| 685 | 911 aa hypothetical protein | |||
| 1814 | 124 aa hypothetical protein | |||
| 1815 | M | M.Hsp5569ORF7645P (38% identity) | M.Hma5501ORF1815P | |
| 1816 | 371 aa hypothetical protein | |||
| 685 | 911 aa hypothetical protein | |||
| 686 | R | TspA0121ORF6700P (61% identity) | ATTAAT | Hma5501ORF687P |
| 687 | M | M.Csp356ORF2225P (41% identity) | M.Hma5501ORF687P | |
| 688 | 180 aa hypothetical protein | |||
| 1104 | 123 aa hypothetical protein | |||
| 1105 | M | M.Hap1501ORF2235P (65% identity) | TCNNGA | M.Hma5501ORF1105P |
| 1106 | 267 aa hypothetical protein | |||
| 1107 | 200 aa hypothetical protein | |||
| 1108 | 90 aa hypothetical protein | |||
| 1109 | txe/YoeB family addiction module toxin | |||
| 1110 | 75 aa hypothetical protein | |||
| 1111 | RM | Hpy84ORF6945P (19% identity) | Hma5501ORF1105P | |
| 1112 | 530 aa hypothetical protein | |||
| 1565 | 497 aa hypothetical protein | |||
| 1566 | M | M.Che9613ORF2625P (52% identity) | GGCC | M.Hma5501ORF1566P |
| 1567 | 156 aa hypothetical protein | |||
| 97 | 252 aa hypothetical protein | |||
| 98 | RM | HmuST1ORF7035P (41% identity) | Hma5501ORF98P | |
| 99 | 91 aa hypothetical protein | |||
| 101 | nickel ABC transporter, permease subunit NikB | |||
| 102 | RM | Hci629ORFMP (18% identity) | Hma5501ORF102P | |
| 103 | 662 aa hypothetical protein | |||
| 102 | 580 aa hypothetical protein | |||
| 103 | RM | 662 aa hypothetical protein | Hma5501ORF103P | |
| 104 | 352 aa hypothetical protein | |||
| 1130 | 432 aa hypothetical protein | |||
| 1131 | M | M.McaG122ORF4205P (54% identity) | TCNNGA | M.Hma5501ORF1131P |
| 1132 | transaldolase | |||
| 161 | Fe-S cluster assembly protein NifU | |||
| 162 | M | M.Mmy165415ORF3535P (58% identity) | RCATGY | M.Hma5501ORF162P |
| 163 | 240 aa hypothetical protein | |||
| 163 | 240 aa hypothetical protein | |||
| 164 | R | Hci629ORFDP (78% identity) | GATC | Hma5501ORF165P |
| 165 | M | M.HciP01DORFDP (76% identity) | GATC | M.Hma5501ORF165P |
| 166 | 629 aa hypothetical protein | |||
| 1208 | 85 aa hypothetical protein | |||
| 1209 | R | Fpr3ORF18930P (77% identity) | GCGCGC | Hma5501ORF1210P |
| 1210 | M | M.Fpr3ORF18930P (64% identity) | GCGCGC | M.Hma5501ORF1210P |
| 1211 | 143 aa hypothetical protein | |||
| 1245 | 394 aa hypothetical protein | |||
| ??? | R | Htr114ORF2220P (59% identity) | GTAC | Hma5501ORF1248P |
| 1248 | M | M.Csp57310ORF1947P (53% identity) | GTAC | M.Hma5501ORF1248P |
| 1249 | 540 aa hypothetical protein | |||
| 1693 | 197 aa hypothetical protein | |||
| 1694 | M | M.HhiYS1ORFUP (71% identity) | CCGG | M.Hma5501ORF1694P |
| 1695 | 428 aa hypothetical protein | |||
| 1694 | 294 aa hypothetical protein | |||
| 1695 | M | M.Hfe13102II (69% identity) | GTNNAC | M.Hma5501ORF1695P |
| 1696 | R | Csp12175ORF524P (75% identity) | GTNNAC | Hma5501ORF1695P |
| 1697 | 650 aa hypothetical protein | |||
| 831 | chorismate mutase | |||
| 832 | RM | Cje6476ORF8540P (45% identity) | Hma5501ORF832P | |
| 833 | diaminopimelate decarboxylase | |||
| 248 | formate acetyltransferase | |||
| 249 | M | M.Fbr15ORF837P (53% identity) | M.Hma5501ORF249P | |
| 250 | R | TpeTA4ORF1280P (41% identity) | Hma5501ORF249P | |
| 251 | 250 aa hypothetical protein | |||
| 255 | 472 aa hypothetical protein | |||
| 256 | M | 135 aa hypothetical protein | GCNGC | M.Hma5501ORF256P |
| 257 | 254 aa hypothetical protein | |||
| 258 | R | 65 aa hypothetical protein | GCNGC | Hma5501ORF256P |
| 259 | 74 aa hypothetical protein | |||
| 1322 | 402 aa hypothetical protein | |||
| 1323 | M | M.Hsp6451ORF8965P (58% identity) | GTAC | M.Hma5501ORF1323P |
| 1324 | R | HhiYS1ORFVP (64% identity) | GTAC | Hma5501ORF1323P |
| 1325 | 201 aa hypothetical protein | |||
| 326 | 85 aa hypothetical protein | |||
| 327 | RM | HmuST1ORF2160P (49% identity) | Hma5501ORF327P | |
| 328 | 110 aa hypothetical protein | |||
| 372 | 671 aa hypothetical protein | |||
| 373 | M | M.Fpr32379ORFAP (61% identity) | M.Hma5501ORF373P | |
| 374 | 343 aa hypothetical protein | |||
| 385 | 565 aa hypothetical protein | |||
| ??? | M | M2.MhoSS25ORF2335P (37% identity) | M1.Hma5501ORF386P | |
| 387 | M | M.Hfe50ORF2137P (28% identity) | GCATC | M2.Hma5501ORF386P |
| 388 | R | Msp267ORF2610P (5% identity) | CCATC | Hma5501ORF386P |
| 389 | 333 aa hypothetical protein | |||
| 388 | 550 aa hypothetical protein | |||
| 389 | M | M.Hfe13102ORF1054P (78% identity) | ACNGT | M.Hma5501ORF389P |
| 390 | R | Hfe13102ORF1054P (91% identity) | ACNGT | Hma5501ORF389P |
| 391 | 116 aa hypothetical protein | |||
| 514 | 76 aa hypothetical protein | |||
| 515 | RM | Hsp6451ORF1010P (35% identity) | Hma5501ORF515P | |
| 516 | 76 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1935 | 415 aa hypothetical protein | |||
| 1936 | R | Cup11541ORF549P (44% identity) | Hma5501ORF1938P | |
| 1937 | 207 aa hypothetical protein | |||
| 1938 | M | M.Hmu12714ORF1296P (60% identity) | M.Hma5501ORF1938P | |
| 1939 | pyruvate formate-lyase 1-activating enzyme | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1455 | fructose-bisphosphate aldolase | |||
| 1456 | R | HmuST1GmrSDP (57% identity) | Hma5501GmrSDP | |
| 1457 | 174 aa hypothetical protein | |||
| 1332 | 235 aa hypothetical protein | |||
| 1333 | R | Hsp6451McrCP (39% identity) | Hma5501McrCP | |
| 1334 | R | Ccu8469McrBP (27% identity) | Hma5501McrBP | |
| 1335 | GMP synthase [glutamine-hydrolyzing] | |||