Pseudomonas aeruginosa |
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Putative Pseudomonas aeruginosa RM systems
Ref: Haines,A.S. et al. unpublished
REBASE ref # 20118
| Sequence length: | GenBank #: | |
| Chromosome: | 7,040,086 bp | CGFY00000000 (NZ_CGFY00000000) |
| chromosome 0: | 6,931,425 bp | LR130534 |
| chromosome 0: | 6,451,470 bp | LR130527 |
| chromosome 0: | 6,452,809 bp | LR130531 |
| chromosome 0: | 6,433,960 bp | LR130536 |
| chromosome 0: | 6,434,133 bp | LR130535 |
| chromosome 0: | 6,434,020 bp | LR130537 |
| chromosome 0: | 6,433,962 bp | LR130530 |
| chromosome 0: | 6,493,562 bp | LR130528 |
| chromosome 0: | 6,941,287 bp | LR130533 |
| chromosome 1: | 7,207,057 bp | LS998783 |
| chromosome Mainomosome: | 7,049,347 bp | LT969520 |
| chromosome PA14OR: | 6,541,482 bp | LT608330 |
| chromosome PcyII-10: | 6,288,645 bp | LT673656 |
| chromosome PF725A: | 64,149 bp | LT603684 |
| plasmid 1: | 555,265 bp | LT969519 |
| plasmid 2: | 151,612 bp | LT969521 |
| plasmid p727-IMP: | 430,173 bp | MF344568 |
| plasmid pA681-IMP: | 397,519 bp | MF344570 |
| plasmid pR31014-IMP: | 374,000 bp | MF344571 |
REBASE acronym: PaeRN21
Org_num: 16697
All begin BANRA_, PA14OR_, PA5486_, PARN21_, PERCYII10_, PF725A_, RW109_RW109_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2489 | phage integrase | |||
| 2490 | R | PaePs33ORF7465P (100% identity) | PaeRN21ORF2494P | |
| 2491 | S | S.PaePs33ORF7465P (100% identity) | S.PaeRN21ORF2494P | |
| 2492 | SMC domain-containing protein | |||
| 2493 | 270 aa hypothetical protein | |||
| 2494 | M | M.PspAK6UORFGP (100% identity) | M.PaeRN21ORF2494P | |
| 2495 | restriction endonuclease | |||
| chromosome 0 | ||||
| 4058 | 184 aa hypothetical protein | |||
| 4059 | S | S.PaeTJM4ORFDP (99% identity) | S.Pae00ORF4060P | |
| 4060 | M | M.PaeWC55ORF6515P (100% identity) | M.Pae00ORF4060P | |
| 4061 | 304 aa hypothetical protein | |||
| chromosome 0 | ||||
| 1583 | transposase (identified by ISEscan | |||
| 1584 | R | PaeMF1ORF24740P (100% identity) | Pae009ORF1588P | |
| 1585 | 235 aa hypothetical protein | |||
| 1586 | 447 aa hypothetical protein | |||
| 1587 | S | S.PaeMF1ORF24740P (100% identity) | S.Pae009ORF1588P | |
| 1588 | M | M.PaeMF1ORF24740P (100% identity) | M.Pae009ORF1588P | |
| 1589 | transposase (identified by ISEscan | |||
| 2799 | Endonuclease NucS | |||
| ??? | S | S.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | S.Pae009ORF2801P |
| 2801 | M | M.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | M.Pae009ORF2801P |
| 2802 | 313 aa hypothetical protein | |||
| 2803 | R | PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | Pae009ORF2801P |
| 2804 | 215 aa hypothetical protein | |||
| 3404 | Transcriptional regulatory protein GlrR | |||
| 3405 | R | PaeMF1ORF1540P (100% identity) | Pae009ORF3407P | |
| 3406 | Chromosome partition protein Smc | |||
| 3407 | M | M.Pfl13852ORFAP (100% identity) | M.Pae009ORF3407P | |
| 3408 | S | S.Pfl13852ORFAP (100% identity) | S.Pae009ORF3407P | |
| 3409 | 48 aa hypothetical protein | |||
| chromosome 0 | ||||
| 295 | Transcriptional regulatory protein GlrR | |||
| 296 | R | PaeMF1ORF1540P (100% identity) | Pae005ORF298P | |
| 297 | Chromosome partition protein Smc | |||
| 298 | M | M.Pfl13852ORFAP (100% identity) | M.Pae005ORF298P | |
| 299 | S | S.Pfl13852ORFAP (100% identity) | S.Pae005ORF298P | |
| 300 | 48 aa hypothetical protein | |||
| 4882 | transposase (identified by ISEscan | |||
| 4883 | R | PaeMF1ORF24740P (100% identity) | Pae005ORF4887P | |
| 4884 | 235 aa hypothetical protein | |||
| 4885 | 447 aa hypothetical protein | |||
| 4886 | S | S.PaeMF1ORF24740P (100% identity) | S.Pae005ORF4887P | |
| 4887 | M | M.PaeMF1ORF24740P (100% identity) | M.Pae005ORF4887P | |
| 4888 | transposase (identified by ISEscan | |||
| 6099 | Endonuclease NucS | |||
| ??? | S | S.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | S.Pae005ORF6101P |
| 6101 | M | M.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | M.Pae005ORF6101P |
| 6102 | 313 aa hypothetical protein | |||
| 6103 | R | PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | Pae005ORF6101P |
| 6104 | 215 aa hypothetical protein | |||
| chromosome 1 | ||||
| 272 | Uncharacterised protein | |||
| 273 | M | M.PaesAG1ORF291P (100% identity) | ATGNNNNNNCCTC | M.PaeG1ORF273P |
| ??? | S | S.PaesAG1ORF291P (100% identity) | ATGNNNNNNCCTC | S.PaeG1ORF273P |
| 275 | Divergent AAA domain protein | |||
| 276 | R | PaesAG1ORF291P (100% identity) | ATGNNNNNNCCTC | PaeG1ORF273P |
| 277 | NADPH dehydrogenase | |||
| 2657 | Prophage CP4-57 integrase | |||
| 2658 | M | M.PaesAG1ORF2671P (100% identity) | M.PaeG1ORF2658P | |
| 2659 | S | S.PaesAG1ORF2671P (91% identity) | S.PaeG1ORF2658P | |
| 2660 | Transposase, IS30 family | |||
| 2666 | 5-methylcytosine-specific restriction enzyme | |||
| 2667 | R | PaesAG1ORF2679P (100% identity) | PaeG1ORF2667P | |
| 2668 | transposase OrfB | |||
| 6500 | Uncharacterised protein | |||
| 6501 | S | S.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | S.PaeG1ORF6502P |
| 6502 | M | M.PaesAG1ORF6375P (100% identity) | CACNNNNNNNRTGT | M.PaeG1ORF6502P |
| 6503 | Uncharacterised protein | |||
| 6822 | Virulence protein | |||
| 6823 | R | SacT018ORFDP (99% identity) | PaeG1ORF6827P | |
| 6824 | ATP-binding protein involved in | |||
| 6825 | S | S.SacT018ORFDP (44% identity) | S1.PaeG1ORF6827P | |
| 6826 | S | S.Pae19ORFHP (54% identity) | S2.PaeG1ORF6827P | |
| 6827 | M | M.SacT018ORFDP (100% identity) | M.PaeG1ORF6827P | |
| 6828 | transcriptional regulator | |||
| chromosome Mainomosome | ||||
| 3256 | HTH-type transcriptional repressor YcgE | |||
| 3258 | M | M.PaesAG1ORF2671P (100% identity) | CCCANNNNNNTCG | M.Pae109ORF3258P |
| 3259 | S | S.PaesAG1ORF2671P (100% identity) | CCCANNNNNNTCG | S.Pae109ORF3258P |
| 3260 | 731 aa hypothetical protein | |||
| 3261 | 245 aa hypothetical protein | |||
| 3262 | 547 aa hypothetical protein | |||
| 3263 | ATP-dependent helicase HepA | |||
| 3264 | 5-methylcytosine-specific restriction enzyme B | |||
| 3265 | 5-methylcytosine-specific restriction enzyme | |||
| 3266 | R | PaesAG1ORF2679P (100% identity) | CCCANNNNNNTCG | Pae109ORF3258P |
| 3267 | Integrase core domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2640 | 142 aa hypothetical protein | |||
| 2641 | M | M.PspAK6UORFFP (100% identity) | M1.PaeRN21ORF2641P | |
| 2642 | M | M.PaeH04ORFGP (100% identity) | M2.PaeRN21ORF2641P | |
| 2643 | 581 aa hypothetical protein | |||
| 738 | 448 aa hypothetical protein | |||
| 739 | M | M.PspAK6UORFHP (100% identity) | M.PaeRN21ORF739P | |
| 740 | 576 aa hypothetical protein | |||
| ??? | V | V.PaeR031ORFDP (100% identity) | V.PaeRN21ORF739P | |
| 741 | 233 aa hypothetical protein | |||
| 4639 | Nucleoid-associated protein PSPA7_4451 | |||
| 4640 | M | M.PspHORFAP (100% identity) | M.PaeRN21ORF4640P | |
| 4641 | DNA binding protein | |||
| 2697 | transcriptional regulator | |||
| 2698 | M | M.PaesPA3ORF29655P (100% identity) | M.PaeRN21ORF2698P | |
| 2699 | 96 aa hypothetical protein | |||
| 5476 | Nucleoid-associated protein PSPA7_4451 | |||
| 5477 | M | M.PspHORFAP (100% identity) | M.PaeRN21ORF5477P | |
| 5478 | DNA binding protein | |||
| 6286 | 83 aa hypothetical protein | |||
| 6287 | M | M.PaeR031ORFGP (87% identity) | M.PaeRN21ORF6287P | |
| 6288 | membrane protein | |||
| chromosome 0 | ||||
| 259 | 94 aa hypothetical protein | |||
| ??? | M | M.Pae972ORFJP (100% identity) | M.Pae005ORF260P | |
| ??? | V | V.PaeII40ORF263P (100% identity) | V.Pae005ORF260P | |
| 262 | Cardiolipin synthase B | |||
| 264 | 1333 aa hypothetical protein | |||
| 265 | RM | PaesS1ORF1360P (100% identity) | Pae005ORF265P | |
| 266 | RNA polymerase-associated protein RapA | |||
| 1345 | 178 aa hypothetical protein | |||
| 1346 | M | M.PaeLo557ORF6850P (100% identity) | M.Pae005ORF1346P | |
| 1347 | 100 aa hypothetical protein | |||
| 2392 | 263 aa hypothetical protein | |||
| 2393 | M | M.PaeYTSY4ORF6725P (100% identity) | M.Pae005ORF2393P | |
| 2394 | 159 aa hypothetical protein | |||
| 3307 | 42 aa hypothetical protein | |||
| 3308 | RM | Pal52ORFEP (100% identity) | Pae005ORF3308P | |
| 3309 | 73 aa hypothetical protein | |||
| 4404 | 73 aa hypothetical protein | |||
| 4405 | RM | Pal52ORFEP (100% identity) | Pae005ORF4405P | |
| 4406 | 42 aa hypothetical protein | |||
| chromosome 0 | ||||
| 5144 | Serine/threonine-protein kinase PrkC | |||
| 5145 | RM | M.Paeg012ORF2245P (100% identity) | Pae002ORF5145P | |
| 5146 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 5664 | Serine/threonine-protein kinase PrkC | |||
| 5665 | M | M.Paeg012ORF2245P (100% identity) | M.Pae004ORF5665P | |
| 5666 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 2246 | Serine/threonine-protein kinase PrkC | |||
| 2247 | M | M.Paeg012ORF2245P (100% identity) | M.Pae010ORF2247P | |
| 2248 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 2245 | Serine/threonine-protein kinase PrkC | |||
| 2246 | M | M.Paeg012ORF2245P (100% identity) | M.Pae011ORF2246P | |
| 2247 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 2244 | Serine/threonine-protein kinase PrkC | |||
| 2245 | M | M.PaeEB1ORFAP (99% identity) | M.Paeg012ORF2245P | |
| 2246 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 2245 | Serine/threonine-protein kinase PrkC | |||
| 2246 | M | M.Paeg012ORF2245P (100% identity) | M.Pae003ORF2246P | |
| 2247 | 1225 aa hypothetical protein | |||
| chromosome 0 | ||||
| 894 | 62 aa hypothetical protein | |||
| 895 | M | M.PaePALA42ORF888P (100% identity) | M.Pae00ORF895P | |
| 896 | 83 aa hypothetical protein | |||
| 5258 | 684 aa hypothetical protein | |||
| 5259 | RM | PaeT27ORF10745P (100% identity) | Pae00ORF5259P | |
| 5260 | DNA-binding proteinA | |||
| chromosome 0 | ||||
| 1101 | 73 aa hypothetical protein | |||
| 1102 | RM | Pal52ORFEP (100% identity) | Pae009ORF1102P | |
| 1103 | 42 aa hypothetical protein | |||
| 3367 | 94 aa hypothetical protein | |||
| ??? | M | M.Pae972ORFJP (100% identity) | M.Pae009ORF3368P | |
| ??? | V | V.PaeII40ORF263P (100% identity) | V.Pae009ORF3368P | |
| 3370 | Cardiolipin synthase B | |||
| 3372 | 1333 aa hypothetical protein | |||
| 3373 | RM | PaesS1ORF1360P (100% identity) | Pae009ORF3373P | |
| 3374 | RNA polymerase-associated protein RapA | |||
| 4454 | 178 aa hypothetical protein | |||
| 4455 | M | M.PaeLo557ORF6850P (100% identity) | M.Pae009ORF4455P | |
| 4456 | 100 aa hypothetical protein | |||
| 5504 | 263 aa hypothetical protein | |||
| 5505 | M | M.PaeYTSY4ORF6725P (100% identity) | M.Pae009ORF5505P | |
| 5506 | 159 aa hypothetical protein | |||
| 6424 | 667 aa hypothetical protein | |||
| 6425 | RM | Pal52ORFEP (96% identity) | Pae009ORF6425P | |
| 6426 | 73 aa hypothetical protein | |||
| chromosome 1 | ||||
| 2645 | Transposase | |||
| 2646 | M | M.PaesAG1ORF2662P (100% identity) | M.PaeG1ORF2646P | |
| 2647 | recombination protein F | |||
| 5555 | Nucleoid-associated protein YejK | |||
| 5556 | M | M.PaesAG1ORF5438P (100% identity) | M.PaeG1ORF5556P | |
| 5557 | Arc-like DNA binding domain protein | |||
| 5785 | Uncharacterised protein | |||
| 5786 | R | PmeTTORFEP (100% identity) | CTCGAG | PaeG1ORF5787P |
| ??? | M | M.PmeTTORFEP (100% identity) | CTCGAG | M.PaeG1ORF5787P |
| 5788 | DNA-invertase hin | |||
| 6557 | Transposase, IS30 family | |||
| 6558 | M | M.Pae3773ORF15640P (91% identity) | M.PaeG1ORF6558P | |
| 6559 | R | PaeNDM12ORFBP (99% identity) | PaeG1ORF6558P | |
| 6560 | Replicase family protein | |||
| chromosome Mainomosome | ||||
| 3142 | 185 aa hypothetical protein | |||
| ??? | M | M.SmaCSM2ORF7750P (100% identity) | M.Pae109ORF3143P | |
| 3144 | DNA topoisomerase 3 | |||
| 5370 | 227 aa hypothetical protein | |||
| 5371 | RM | Pae811ORF22270P (99% identity) | Pae109ORF5371P | |
| 5372 | S | S.Sku7850SI (95% identity) | S.Pae109ORF5371P | |
| 5373 | 704 aa hypothetical protein | |||
| 5913 | Nucleoid-associated protein YejK | |||
| 5914 | M | M.PspHORFAP (100% identity) | M.Pae109ORF5914P | |
| 5915 | Arc-like DNA binding domain protein | |||
| 6026 | Nucleoid-associated protein YejK | |||
| 6027 | M | M.PaesC79ORF28725P (100% identity) | M.Pae109ORF6027P | |
| 6028 | Arc-like DNA binding domain protein | |||
| chromosome PA14OR | ||||
| 1248 | 66 aa hypothetical protein | |||
| 1249 | RM | PaesPA14ORFAP (100% identity) | PaeRN21ORF1249P | |
| 1250 | 705 aa hypothetical protein | |||
| chromosome PcyII-10 | ||||
| 2278 | 46 aa hypothetical protein | |||
| 2279 | RM | Pae8506I (100% identity) | Pae10ORF2279P | |
| 2280 | 247 aa hypothetical protein | |||
| chromosome PF725A | ||||
| 7 | DNA adenine methyltransferase | |||
| 8 | M | M.PaeC725ORF3428P (100% identity) | M.PaeRN21ORF8P | |
| ??? | 3-phosphoadenosine 5-phosphosulfate | |||
| plasmid 1 | ||||
| 54 | 315 aa hypothetical protein | |||
| 55 | M | M.PpuAE1ORF29600P (99% identity) | M.Pae109ORF55P | |
| 56 | 118 aa hypothetical protein | |||
| plasmid 2 | ||||
| 7372 | 76 aa hypothetical protein | |||
| 7373 | M | M.PaeSPA01ORF32110P (100% identity) | M.Pae109ORF7373P | |
| 7374 | Recombination-associated protein RdgC | |||
| plasmid p727-IMP | ||||
| ??? | 118 aa Hypothetical protein | |||
| ??? | M | M.PpuSY153ORFAP (100% identity) | M.Pae727ORFAP | |
| ??? | 334 aa Hypothetical protein | |||
| plasmid pA681-IMP | ||||
| ??? | 118 aa Hypothetical protein | |||
| ??? | M | M.Pae31014ORFAP (100% identity) | M.PaeA681ORFAP | |
| ??? | 334 aa Hypothetical protein | |||
| plasmid pR31014-IMP | ||||
| ??? | 118 aa Hypothetical protein | |||
| ??? | M | M.PaeA681ORFAP (100% identity) | M.Pae31014ORFAP | |
| ??? | 334 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5029 | peptidase S8 and S53 subtilisin kexin sedolisin | |||
| 5030 | M | M.PaeF046ORF29810P (100% identity) | M.PaeRN21ORF5030P | |
| 5031 | R | Pst875ORF17380P (99% identity) | PaeRN21ORF5030P | |
| 5032 | 875 aa hypothetical protein | |||
| chromosome Mainomosome | ||||
| 1385 | 407 aa hypothetical protein | |||
| ??? | M | M.PaeM18ORF704P (100% identity) | M.Pae109ORF1386P | |
| 1387 | R | PaeM18ORF704P (14% identity) | Pae109ORF1386P | |
| 1388 | 74 aa hypothetical protein | |||
| 1441 | Mor transcription activator family protein | |||
| 1442 | R | PaeM18ORF704P (85% identity) | Pae109ORF1442P | |
| 1443 | Salicylate biosynthesis isochorismate synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2494 | N-6 DNA methylase | |||
| ??? | R | PaeR031MrrP (86% identity) | PaeRN21MrrP | |
| 2496 | 64 aa hypothetical protein | |||
| chromosome 1 | ||||
| 2664 | ATP-dependent helicase HepA | |||
| 2665 | R | PaeUKJ55McrBP (100% identity) | PaeG1McrBP | |
| 2666 | R | PaesAG1McrCP (100% identity) | PaeG1McrCP | |
| 2667 | Type-1 restriction enzyme R protein | |||
| chromosome Mainomosome | ||||
| 3263 | ATP-dependent helicase HepA | |||
| 3264 | R | PaeUKJ55McrBP (100% identity) | Pae109McrBP | |
| 3265 | R | PaesAG1McrCP (100% identity) | Pae109McrCP | |
| 3266 | Type-1 restriction enzyme R protein | |||