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Putative Haemophilus parasuis SH03 RM systems
Ref: Li,P. et al. unpublished
REBASE ref # 18081
Complete sequence: 2,265,927 bp
GenBank #: CP009158
REBASE acronym: HpaSH03
Org_num: 13577
All begin JL26_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2515 | acyltransferase | |||
2520 | R | Hpa906ORF3080P (99% identity) | HpaSH03ORF2530P | |
2525 | S | S.Hpa15995ORF790P (66% identity) | S.HpaSH03ORF2530P | |
2530 | M | M.Hpa906ORF3080P (100% identity) | M.HpaSH03ORF2530P | |
2540 | RNA polymerase sigma factor RpoE | |||
4015 | 87 aa hypothetical protein | |||
??? | S | restriction endonuclease subunit S | S1.HpaSH03ORF4015P | |
4020 | IS256 family transposase | |||
4025 | transposase | |||
??? | S | S1.Hpa906ORF4500P (95% identity) | S2.HpaSH03ORF4015P | |
4035 | HNH endonuclease | |||
4040 | M | M.HpaSHORF1954P (100% identity) | M.HpaSH03ORF4015P | |
4045 | metal-dependent hydrolase | |||
4050 | DUF3387 domain-containing protein | |||
4055 | 143 aa hypothetical protein | |||
4060 | cytochrome C nitrite reductase | |||
4065 | transposase | |||
??? | S | S2.Hpa906ORF4500P (100% identity) | S3.HpaSH03ORF4015P | |
4075 | 369 aa hypothetical protein | |||
4045 | metal-dependent hydrolase | |||
4050 | R | HpaSH03ORF4015P (90% identity) | HpaSH03ORF4050P | |
4055 | 143 aa hypothetical protein | |||
4275 | aspartate aminotransferase | |||
4280 | R | Gpa1807ORF6225P (99% identity) | HpaSH03ORF4290P | |
4285 | S | S.HpaST41ORF2410P (99% identity) | S.HpaSH03ORF4290P | |
4290 | M | M.GpaHPS7ORF3225P (99% identity) | M.HpaSH03ORF4290P | |
4295 | MFS transporter | |||
7910 | DNA polymerase | |||
7920 | M | S.Gpa29755ORF10425P (90% identity) | M.HpaSH03ORF7920P | |
7925 | 134 aa hypothetical protein | |||
9185 | tRNA uridine 5-carboxymethylaminomethyl | |||
9190 | S | S.Gpa412ORF95P (26% identity) | S1.HpaSH03ORF9215P | |
??? | S | S.Hpa906ORF10680P (62% identity) | S2.HpaSH03ORF9215P | |
9200 | R | GpaXP11ORF8450P (99% identity) | HpaSH03ORF9215P | |
9205 | 392 aa hypothetical protein | |||
9210 | 163 aa hypothetical protein | |||
9215 | M | M.Gpad76ORF11115P (99% identity) | M.HpaSH03ORF9215P | |
9220 | 16S rRNA methyltransferase | |||
10035 | 137 aa hypothetical protein | |||
10045 | M | M.HpaST41ORF7300P (99% identity) | M.HpaSH03ORF10045P | |
10050 | anticodon nuclease | |||
10055 | S | S.Gpa170504ORF10760P (65% identity) | S.HpaSH03ORF10045P | |
10060 | 255 aa hypothetical protein | |||
10065 | 141 aa hypothetical protein | |||
10070 | R | Hpa15995ORF1730P (99% identity) | HpaSH03ORF10045P | |
10080 | 71 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1650 | aspartate-semialdehyde dehydrogenase | |||
??? | M | M.Gpa412ORF4725P (98% identity) | M.HpaSH03ORF1655P | |
1670 | pseudogene | |||
2160 | peptide chain release factor 1 | |||
2165 | M | M.HpaNNORF3850P (100% identity) | GCGC | M.HpaSH03ORF2165P |
2170 | R | HpaSHORF791P (100% identity) | GCGC | HpaSH03ORF2165P |
2175 | SAM-dependent methyltransferase | |||
??? | restriction endonuclease subunit S | |||
4035 | R | Gpa412ORF7180P (100% identity) | HpaSH03ORF4035P | |
4040 | modification methylase | |||
4760 | 199 aa hypothetical protein | |||
4765 | M | M.HpaNagORF227P (99% identity) | CCGG | M.HpaSH03ORF4765P |
4770 | condesin subunit E | |||
6210 | 3-dehydroquinate synthase | |||
6215 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.HpaSH03ORF6215P |
6220 | transporter | |||
7005 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate | |||
7010 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.HpaSH03ORF7010P |
7015 | R | HpaST41ORF8905P (100% identity) | CGCG | HpaSH03ORF7010P |
7020 | lactate dehydrogenase | |||
7925 | 134 aa hypothetical protein | |||
7930 | M | HpaNagORF1885P (100% identity) | M1.HpaSH03ORF7930P | |
7935 | M | HpaNagORF1886P (100% identity) | M2.HpaSH03ORF7930P | |
7940 | RM | HpaNagORF1887P (100% identity) | HpaSH03ORF7930P | |
7945 | twitching motility protein PilT | |||
8545 | 197 aa hypothetical protein | |||
8550 | R | HpaSHORF1983P (98% identity) | AAGCTT | HpaSH03ORF8550P |
??? | M | M.Hpa906ORF10045P (100% identity) | AAGCTT | M.HpaSH03ORF8550P |
8560 | valine--tRNA ligase | |||
10285 | 113 aa hypothetical protein | |||
10290 | RM | GpaH80ORF9365P (99% identity) | HpaSH03ORF10290P | |
10295 | S | S.Hpa906ORF11765P (99% identity) | S.HpaSH03ORF10290P | |
10300 | toxin Fic | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
10735 | ketol-acid reductoisomerase | |||
??? | M | M.GpaHF57ORF830P (95% identity) | CTCC | M.HpaSH03ORF10740P |
10750 | R | Gpa4ORF1105P (99% identity) | CTCC | HpaSH03ORF10740P |
10755 | addiction module protein |