Helicobacter pylori NY40 |
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Putative Helicobacter pylori NY40 RM systems
Ref: Uchiyama,J. et al. unpublished
REBASE ref # 17698
Complete sequence: 1,696,917 bp
GenBank #: AP014523
REBASE acronym: HpyNY40
Org_num: 12987
All begin NY40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 505 | FAD-dependent thymidylate synthase | |||
| 506 | S | S.HpyMKM5ORF1462P (64% identity) | S.HpyNY40ORF507P | |
| ??? | M | M.HpyC016XVI (96% identity) | M.HpyNY40ORF507P | |
| 509 | R | HpyT022IVP (94% identity) | HpyNY40ORF507P | |
| 510 | metal-dependent hydrolase | |||
| 1065 | polyphosphate kinase | |||
| 1067 | S | S.HpyGRE040ORF2185P (99% identity) | S.HpyNY40ORF1068P | |
| 1068 | M | M.HpySP601XV (97% identity) | M.HpyNY40ORF1068P | |
| 1069 | R | HpyOK317ORFRP (96% identity) | HpyNY40ORF1068P | |
| 1070 | 631 aa hypothetical protein | |||
| 1471 | outer membrane protein HofF | |||
| 1472 | S | S.HpyT017ORF3815P (66% identity) | S.HpyNY40ORF1472P | |
| 1473 | cadmium-transporting ATPase | |||
| 1530 | hydroxyethylthiazole kinase | |||
| ??? | R | HpySP12XIVP (95% identity) | HpyNY40ORF1534P | |
| 1533 | S | S.HpyBR23VI (96% identity) | S.HpyNY40ORF1534P | |
| ??? | M | M.HpyJA110ORF4210P (96% identity) | M.HpyNY40ORF1534P | |
| 1537 | integral membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | biotin carboxylase | |||
| ??? | M | M.HpySP319XI (98% identity) | TCNNGA | M.HpyNY40ORF51P |
| ??? | R | HpyPE104ORF5415P (100% identity) | TCNNGA | HpyNY40ORF51P |
| 55 | laminin subunit alpha-2 precursor | |||
| 93 | 144 aa hypothetical protein | |||
| 94 | M | M.HpyL030XIII (98% identity) | GCGC | M.HpyNY40ORF94P |
| 95 | anti-sigma 28 factor | |||
| 195 | haloacid dehalogenase | |||
| 196 | M | M.HpySP804I (100% identity) | CATG | M.HpyNY40ORF196P |
| ??? | R | HpySP319IP (95% identity) | CATG | HpyNY40ORF196P |
| 200 | serine acetyltransferase | |||
| 340 | protease | |||
| 341 | R | HpySWT04IVP (86% identity) | GANTC | HpyNY40ORF343P |
| 342 | 51 aa hypothetical protein | |||
| 343 | M | M.HpySP311VIII (99% identity) | GANTC | M.HpyNY40ORF343P |
| ??? | DNA methyltransferase | |||
| 343 | modification methylase HinfI | |||
| ??? | RM | HpySP802ORF6645P (89% identity) | HpyNY40ORF344P | |
| 346 | nicotinate-nucleotide pyrophosphorylase | |||
| 444 | DNA polymerase I | |||
| 445 | S | S1.HpyMKM1ORF1380P (96% identity) | S2.HpyNY40ORF446P | |
| 446 | S | S1.Hpyfe2ORF270P (97% identity) | S1.HpyNY40ORF446P | |
| 447 | RM | HpyBR22ORF6870P (98% identity) | HpyNY40ORF446P | |
| 448 | HP1473-transformation associated protein | |||
| 490 | 69 aa hypothetical protein | |||
| 491 | RM | HpyK051ORF7245P (77% identity) | HpyNY40ORF491P | |
| 492 | type III restriction enzyme | |||
| 557 | 67 aa hypothetical protein | |||
| 558 | M | M.HpyCOL112ORF7600P (99% identity) | TGCA | M.HpyNY40ORF558P |
| 559 | R | HpyH002XIIP (100% identity) | TGCA | HpyNY40ORF558P |
| 560 | elongation factor Ts | |||
| 662 | agmatine deiminase | |||
| 663 | M | M1.HpyMT5135IV (100% identity) | CCTC | M1.HpyNY40ORF663P |
| 664 | M | M1.HpyMTT79ORFZP (100% identity) | CCTC | M2.HpyNY40ORF663P |
| 665 | R | HpyDO5IVP (95% identity) | CCTC | HpyNY40ORF663P |
| 666 | sodium/proline symporter | |||
| 706 | HrgA protein | |||
| 707 | M | M.HpyJO6X (94% identity) | GATC | M.HpyNY40ORF707P |
| 708 | alpha-1,2-fucosyltransferase | |||
| 793 | elongation factor P | |||
| 794 | M | M1.HpySP319ORF860P (100% identity) | M.HpyNY40ORF794P | |
| 795 | 94 aa hypothetical protein | |||
| 796 | 131 aa hypothetical protein | |||
| 797 | restriction enzyme | |||
| 798 | R | R2.HpyME27ORF870P (93% identity) | HpyNY40ORF794P | |
| 799 | sialic acid synthase | |||
| 885 | exodeoxyribonuclease VII large subunit | |||
| 886 | M | M.HpyBR1XII (82% identity) | TCGA | M.HpyNY40ORF886P |
| 887 | 60 aa hypothetical protein | |||
| 888 | 148 aa hypothetical protein | |||
| ??? | R | Hpy5024ORF8065P (94% identity) | CCGG | HpyNY40ORF891P |
| 891 | M | M.HpyME02III (99% identity) | CCGG | M.HpyNY40ORF891P |
| 892 | ATP-dependent protease binding subunit/heatshock | |||
| 1082 | outer membrane protein | |||
| 1083 | M | adenine-specific DNA-methyltransferase | ATTAAT | M1.HpyNY40ORF1083P |
| 1084 | M | M.HpySP503II (97% identity) | ATTAAT | M2.HpyNY40ORF1083P |
| 1085 | non-functional type II restriction endonuclease | |||
| 1086 | GTP-binding protein TypA | |||
| 1087 | M | M.HpyNCI40III (100% identity) | ACNGT | M.HpyNY40ORF1087P |
| 1088 | R | HpySP312IIP (100% identity) | ACNGT | HpyNY40ORF1087P |
| 1089 | type II DNA modification enzyme | |||
| 1088 | type II restriction endonuclease | |||
| 1089 | M | type II DNA modification enzyme | ACGT | M1.HpyNY40ORF1089P |
| 1090 | M | type II DNA modification enzyme | ACGT | M2.HpyNY40ORF1089P |
| 1091 | catalase-like protein | |||
| 1109 | DNA gyrase subunit B | |||
| ??? | M | M.Hpy13207X (97% identity) | GTAC | M.HpyNY40ORF1110P |
| 1112 | R | HpyPE105ORF2340P (64% identity) | GTAC | HpyNY40ORF1110P |
| 1113 | 236 aa hypothetical protein | |||
| 1345 | glycerol-3-phosphate dehydrogenase | |||
| 1346 | RM | HpyK262ORF4210P (47% identity) | HpyNY40ORF1346P | |
| 1347 | type IIG restriction-modification enzyme | |||
| 1346 | type II R-M system protein | |||
| 1347 | RM | HpyU421ORF3150P (45% identity) | HpyNY40ORF1347P | |
| 1348 | 823 aa hypothetical protein | |||
| 1366 | polysaccharide biosynthesis protein | |||
| ??? | M | M.HpySP312ORF2675P (99% identity) | CCNNGG | M.HpyNY40ORF1367P |
| 1370 | R | HpyU206ORF3295P (100% identity) | CCNNGG | HpyNY40ORF1367P |
| 1371 | acetone carboxylase gamma subunit | |||
| 1593 | flagellar hook protein FlgE | |||
| 1594 | R | HpyT014VIIIP (91% identity) | GTNNAC | HpyNY40ORF1595P |
| ??? | M | M.HpyTW06VII (97% identity) | GTNNAC | M.HpyNY40ORF1595P |
| 1597 | rep helicase, single-stranded DNA-dependent | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 356 | transcriptional regulator | |||
| ??? | M | M.HpyGCT27ORF1400P (95% identity) | M.HpyNY40ORF357P | |
| 359 | R | HpyNY40ORF358P (100% identity) | HpyNY40ORF357P | |
| 360 | rod shape-determining protein MreC | |||
| 357 | adenine-specific DNA methylase | |||
| 358 | M | M.HpyNY40ORF357P (94% identity) | M.HpyNY40ORF358P | |
| 359 | R | HpyNY40ORF357P (100% identity) | HpyNY40ORF358P | |
| 360 | rod shape-determining protein MreC | |||
| 369 | endonuclease G | |||
| 370 | M | M.HpyCOL114XV (95% identity) | M.HpyNY40ORF370P | |
| 371 | R | HpyPE130ORF6750P (84% identity) | HpyNY40ORF370P | |
| 372 | biotin synthase | |||
| 491 | type IIG restriction-modification enzyme | |||
| 492 | R | Hpyfe73ORF40P (97% identity) | HpyNY40ORF493P | |
| ??? | M | M.Hpy458ORFIP (96% identity) | M.HpyNY40ORF493P | |
| 495 | DNA recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 796 | 131 aa hypothetical protein | |||
| 797 | R | R1.HpySP15ORF885P (87% identity) | HpyNY40McrBP | |
| 798 | type II restriction enzyme | |||