Escherichia coli ST540A |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli ST540A RM systems
Ref: Xavier,B.B. et al. Genome Announc 2 (2), e00239-14 (2014)
REBASE ref # 17449
Complete sequence: 4,807,977 bp
GenBank #: CP007390
REBASE acronym: Eco540A
Org_num: 12981
All begin CF57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7170 | transposase | |||
| 7175 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | Eco540AIIP |
| 7180 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.Eco540AII |
| 7185 | M | M.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | M.Eco540AII |
| 7190 | chromosome partitioning protein ParB | |||
| 25925 | antitoxin | |||
| 25930 | M | M.Eco540I (100% identity) | GAANNNNNNRTCG | M.Eco540AI |
| 25935 | S | S.Eco751ORF26970P (100% identity) | GAANNNNNNRTCG | S.Eco540AI |
| 25945 | R | Eco540IP (100% identity) | GAANNNNNNRTCG | Eco540AIP |
| 25950 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2370 | cell division protein DamX | |||
| 2380 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco540ADamP |
| 2385 | ribulose-phosphate 3-epimerase | |||
| 3105 | 59 aa hypothetical protein | |||
| 3110 | M | M.EcoC0320ORF2480P (100% identity) | ATGCAT | M.Eco540AORF3110P |
| 3115 | Fis family transcriptional regulator | |||
| 8875 | pseudogene | |||
| 8880 | M | M.Eco540ORF21180P (100% identity) | GATC | M.Eco540AORF8880P |
| 8885 | exonuclease | |||
| 11680 | hydrolase | |||
| 11685 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco540ADcmP |
| 11690 | V | V.EcosEC7DcmP (100% identity) | V.Eco540ADcmP | |
| 11695 | multidrug DMT transporter | |||
| 19590 | 281 aa hypothetical protein | |||
| 19595 | M | M.Ecoww7ORF22075P (100% identity) | GATC | M.Eco540AORF19595P |
| 19600 | 146 aa hypothetical protein | |||
| 23010 | holin | |||
| 23015 | M | M.Eco540ORF6595P (100% identity) | M.Eco540AORF23015P | |
| 23025 | 67 aa hypothetical protein | |||
| 26145 | 308 aa hypothetical protein | |||
| 26160 | M | M.UbapRSB107ORFAP (100% identity) | M.Eco540AORF26160P | |
| 26165 | 73 aa hypothetical protein | |||