Escherichia coli LR09 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli LR09 RM systems
Ref: Leonard,S.R. et al. Genome Announc 2 (2), e00272-14 (2014)
REBASE ref # 17547
GenBank #: JDVF00000000
REBASE acronym: EcoLR09
Org_num: 12880
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | EcoH8aORFCP (99% identity) | GATGNNNNNNTAC | EcoLR09ORFFP |
| ??? | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoLR09ORFFP |
| ??? | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoLR09ORFFP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoLR09ORFGP |
| ??? | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.EcoLR09ORFEP |
| ??? | M | M.Sen94620ORF28085P (100% identity) | M.EcoLR09ORFLP | |
| ??? | M | M.UbapRSB107ORFAP (100% identity) | M.EcoLR09ORFMP | |
| ??? | V | V.EcoNIH1DcmP (100% identity) | V.EcoLR09DcmP | |
| ??? | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoLR09DcmP |
| ??? | M | M.SdyFF10ORF21495P (100% identity) | GATC | M.EcoLR09ORFAP |
| ??? | M | M.SspPIBORF6330P (100% identity) | GATC | M.EcoLR09ORFCP |
| 923 | Dam family site-specific DNA--methyltransferase | |||
| 925 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoLR09ORFDP |
| 926 | phage regulatory CII family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | DNA restriction subunit type III restriction and modification system | EcoLR09ORFJP | |
| ??? | M | M.Eco9624ORFEP (100% identity) | M.EcoLR09ORFJP | |
| ??? | 757 aa hypothetical protein | |||
| ??? | 644 aa hypothetical protein | |||
| ??? | R | Eco9624ORFEP (83% identity) | EcoLR09ORFKP | |
| ??? | M | M.EcoRS571ORF20935P (100% identity) | GAACC | M.EcoLR09ORFIP |
| ??? | R | SflN116ORF19490P (100% identity) | GAACC | EcoLR09ORFIP |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR09ORFBP |