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Putative Helicobacter pylori BM013B RM systems
Ref: Linz,B. et al. Nat Commun (2014) In press
REBASE ref # 17578
Complete sequence: 1,604,212 bp
GenBank #: CP007606
REBASE acronym: Hpy13
Org_num: 12845
All begin EG64_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2270 | polyphosphate kinase | |||
2285 | S | S.Hpy13AORF2290P (100% identity) | S.Hpy13ORF2290P | |
2290 | M | M.Hpy13AORF2290P (100% identity) | M.Hpy13ORF2290P | |
2295 | R | Hpy13AORF2290P (100% identity) | Hpy13ORF2290P | |
2300 | 631 aa hypothetical protein | |||
4080 | hydroxyethylthiazole kinase | |||
4085 | R | Hpy13AORF4090P (100% identity) | Hpy13ORF4095P | |
4090 | S | S.Hpy13AORF4090P (100% identity) | S.Hpy13ORF4095P | |
??? | M | M.Hpy13AORF4090P (100% identity) | M.Hpy13ORF4095P | |
4105 | membrane protein | |||
7000 | 81 aa hypothetical protein | |||
7010 | S | S.Hpy13AORF7005P (100% identity) | S.Hpy13ORF7010P | |
7015 | formyltetrahydrofolate deformylase | |||
7785 | FAD-dependent thymidylate synthase | |||
??? | S | type I restriction endonuclease subunit S | S1.Hpy13ORF7805P | |
??? | S | S.Hpy13AORF7800P (50% identity) | S2.Hpy13ORF7805P | |
7805 | M | M.Hpy13AORF7800P (100% identity) | M.Hpy13ORF7805P | |
7810 | R | Hpy13AORF7800P (100% identity) | Hpy13ORF7805P | |
7815 | metal-dependent hydrolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
270 | agmatine deiminase | |||
275 | M | M1.Hpy13AORF275P (100% identity) | CCTC | M1.Hpy13ORF275P |
280 | M | M2.Hpy13AORF275P (100% identity) | CCTC | M2.Hpy13ORF275P |
285 | proline:sodium symporter PutP | |||
480 | malonyl CoA-ACP transacylase | |||
490 | R | Hpy13AORF490P (100% identity) | GATC | Hpy13ORF495P |
495 | M | M.Hpy13AORF490P (100% identity) | GATC | M.Hpy13ORF495P |
500 | alpha-1,2-fucosyltransferase | |||
1360 | exodeoxyribonuclease VII large subunit | |||
1365 | R | HpyIN5IVP (100% identity) | CCGG | Hpy13ORF1370P |
1370 | M | M.HpyKH30ORFPP (100% identity) | CCGG | M.Hpy13ORF1370P |
1375 | chaperone protein ClpB | |||
2370 | membrane protein | |||
2375 | M | M.Hpy13AORF2375P (100% identity) | ATTAAT | M.Hpy13ORF2375P |
2380 | glycosyltransferase 9 family protein | |||
2385 | GTP-binding protein | |||
2390 | M | M.Hpy13AORF2390P (100% identity) | ACGT | M.Hpy13ORF2390P |
2395 | catalase | |||
2490 | DNA gyrase subunit B | |||
2495 | M | M.Hpy13AORF2495P (100% identity) | GTAC | M.Hpy13ORF2495P |
2500 | R | Hpy13AORF2495P (100% identity) | GTAC | Hpy13ORF2495P |
2505 | membrane protein | |||
3175 | glycerol-3-phosphate dehydrogenase | |||
3180 | RM | Hpy13AORF3180P (100% identity) | Hpy13ORF3180P | |
3185 | 450 aa hypothetical protein | |||
4405 | flagellar hook protein FlgE | |||
4410 | R | Hpy13AORF4410P (100% identity) | GTNNAC | Hpy13ORF4415P |
4415 | M | M.Hpy13AORF4410P (100% identity) | GTNNAC | M.Hpy13ORF4415P |
4420 | ATP-dependent DNA helicase | |||
5205 | acetyl-CoA carboxylase | |||
5210 | M | M.Hpy13AORF5205P (100% identity) | TCNNGA | M.Hpy13ORF5210P |
5215 | R | HpyME23XIP (100% identity) | TCNNGA | Hpy13ORF5210P |
5220 | Laminin subunit alpha-2 precursor | |||
5405 | 144 aa hypothetical protein | |||
5410 | M | M.Hpy13AORF5405P (100% identity) | GCGC | M.Hpy13ORF5410P |
5415 | flagellar biosynthesis anti-sigma factor FlgM | |||
5700 | membrane protein | |||
5710 | M | M.Hpy13AORF5705P (100% identity) | TCNGA | M.Hpy13ORF5710P |
5715 | R | Hpy13AORF5705P (100% identity) | TCNGA | Hpy13ORF5710P |
5720 | purine nucleoside phosphorylase | |||
5900 | hydrolase | |||
??? | M | M.Hpy13AORF5900P (100% identity) | CATG | M.Hpy13ORF5905P |
5910 | R | pseudogene | CATG | Hpy13ORF5905P |
5920 | serine acetyltransferase | |||
6675 | glycosyltransferase 9 family protein | |||
6680 | RM | DNA methyltransferase | Hpy13ORF6680P | |
6690 | DNA methyltransferase | |||
6680 | DNA methyltransferase | |||
6690 | RM | Hpy13AORF6685P (100% identity) | Hpy13ORF6690P | |
6695 | nicotinate-nucleotide pyrophosphorylase | |||
6745 | chemotaxis protein CheY | |||
6750 | R | Hpy13AORF6750P (100% identity) | GAAGA | Hpy13ORF6755P |
6755 | M | M1.Hpy13AORF6750P (100% identity) | GAAGA | M1.Hpy13ORF6755P |
6760 | M | M2.Hpy13AORF6750P (100% identity) | GAAGA | M2.Hpy13ORF6755P |
6765 | site-specific DNA-methyltransferase | |||
6915 | lipopolysaccharide 1,2-glucosyltransferase | |||
6920 | R | HpyISR10ORF6770P (100% identity) | CGCG | Hpy13ORF6925P |
6925 | M | M.HpyISR10ORF6770P (100% identity) | CGCG | M.Hpy13ORF6925P |
6930 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
7230 | DNA polymerase I | |||
7235 | S | S.Hpy13AORF7235P (100% identity) | S.Hpy13ORF7240P | |
7240 | RM | Hpy13AORF7235P (100% identity) | Hpy13ORF7240P | |
7245 | amidophosphoribosyltransferase | |||
7370 | permease | |||
7375 | M | M1.Hpy13AORF7370P (100% identity) | CCATC | M1.Hpy13ORF7375P |
7380 | M | M2.Hpy13AORF7370P (100% identity) | GATGG | M2.Hpy13ORF7375P |
7385 | R | Hpy13AORF7370P (100% identity) | CCATC | Hpy13ORF7375P |
7390 | membrane protein | |||
7460 | transcription elongation factor NusA | |||
7475 | RM | Hpy13AORF7470P (100% identity) | Hpy13ORF7475P | |
7480 | DEAD/DEAH box helicase | |||
7890 | 67 aa hypothetical protein | |||
7895 | M | M.Hpy13AORF7890P (100% identity) | TGCA | M.Hpy13ORF7895P |
7900 | R | Hpy13AORF7890P (100% identity) | TGCA | Hpy13ORF7895P |
7905 | cytochrome C | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6760 | restriction endonuclease subunit M | |||
6765 | M | M1.Hpy13AORF6760P (100% identity) | M1.Hpy13ORF6765P | |
6770 | M | DNA methyltransferase | M2.Hpy13ORF6765P | |
6775 | R | Hpy13AORF6760P (100% identity) | Hpy13ORF6765P | |
6780 | rod shape-determining protein MreC | |||
6830 | endonuclease | |||
6835 | M | M.Hpy13AORF6830P (100% identity) | M.Hpy13ORF6835P | |
??? | R | Hpy13AORF6830P (98% identity) | Hpy13ORF6835P | |
6850 | biotin synthase | |||
7475 | restriction endonuclease | |||
7480 | R | Hpy13AORF7480P (100% identity) | Hpy13ORF7485P | |
??? | M | M.Hpy13AORF7480P (100% identity) | M.Hpy13ORF7485P | |
7495 | integrase | |||
7720 | relaxase | |||
7730 | M | M.Hpy13AORF7725P (99% identity) | M.Hpy13ORF7730P | |
7735 | ATP-dependent DNA helicase RecG |