Helicobacter pylori J166 |
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Putative Helicobacter pylori J166 RM systems
Ref: Linz,B. et al. Nat Commun (2014) In press
REBASE ref # 17578
Complete sequence: 1,650,561 bp
GenBank #: CP007603
REBASE acronym: Hpy166
Org_num: 1527
All begin EG65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2240 | polyphosphate kinase | |||
| 2255 | S | S.HpyR3cORF5365P (100% identity) | S.Hpy166ORF2260P | |
| 2260 | M | M.Hpy479C2ORFB1P (96% identity) | M.Hpy166ORF2260P | |
| ??? | R | HpyL036ORF2325P (90% identity) | Hpy166ORF2260P | |
| 2280 | 631 aa hypothetical protein | |||
| 2550 | restriction endonuclease | |||
| 2555 | M | M.HpyR3cORF5080P (70% identity) | M.Hpy166ORF2555P | |
| 2560 | S | S.HpyL033XV (60% identity) | S.Hpy166ORF2555P | |
| 2565 | R | HpyR3cORF5080P (97% identity) | Hpy166ORF2555P | |
| 2570 | hydroxyethylthiazole kinase | |||
| 2860 | cadmium transporter | |||
| ??? | S | S.Hpy23AORFIP (97% identity) | S.Hpy166ORF2865P | |
| 2870 | membrane protein | |||
| 7340 | 78 aa hypothetical protein | |||
| 7350 | S | S.HpyR3cORF510P (99% identity) | S.Hpy166ORF7350P | |
| 7355 | formyltetrahydrofolate deformylase | |||
| 7925 | FAD-dependent thymidylate synthase | |||
| 7940 | S | S.HpyKH16ORFWP (95% identity) | S.Hpy166ORF7945P | |
| 7945 | M | M.HpyGE6IV (95% identity) | M.Hpy166ORF7945P | |
| 7950 | R | HpyF018XIP (93% identity) | Hpy166ORF7945P | |
| 7955 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 275 | DNA methyltransferase | |||
| 280 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M.Hpy166ORF275P |
| 285 | R | HpyR3cORF7300P (100% identity) | CCTC | Hpy166ORF275P |
| ??? | type II restriction endonuclease | |||
| 285 | restriction endonuclease | |||
| ??? | M | M.HpyB8ORF1517P (100% identity) | GTSAC | M.Hpy166ORF290P |
| 295 | R | HpyR3cORF7290P (99% identity) | GTSAC | Hpy166ORF290P |
| 305 | DNA methyltransferase | |||
| 500 | pseudogene | |||
| 505 | M | M.HpyG008II (96% identity) | GATC | M.Hpy166ORF505P |
| 510 | alpha-1,2-fucosyltransferase | |||
| 550 | glycosyltransferase | |||
| 555 | R | HpySP707XVP (99% identity) | ACGG | Hpy166ORF560P |
| 560 | M | M.HpyGE1ORF7460P (99% identity) | ACGG | M.Hpy166ORF560P |
| 565 | chemotaxis protein | |||
| 1360 | exodeoxyribonuclease VII large subunit | |||
| 1365 | M | M.HpyR3cORF6235P (98% identity) | TCGA | M.Hpy166ORF1365P |
| 1370 | 198 aa hypothetical protein | |||
| 1370 | 198 aa hypothetical protein | |||
| 1375 | R | HpyPE111IVP (85% identity) | CCGG | Hpy166ORF1380P |
| 1380 | M | M.HpyS298ORF3450P (99% identity) | CCGG | M.Hpy166ORF1380P |
| 1385 | chaperone protein ClpB | |||
| 2345 | membrane protein | |||
| 2350 | M | M.HpyH018ORF2225P (97% identity) | ATTAAT | M.Hpy166ORF2350P |
| 2355 | glycosyltransferase 9 family protein | |||
| 2360 | GTP-binding protein | |||
| 2365 | M | DNA methyltransferase | ACNGT | M.Hpy166ORF2365P |
| 2370 | pseudogene | |||
| 2365 | DNA methyltransferase | |||
| 2370 | M | M.HpyCOL108XVII (97% identity) | ACGT | M.Hpy166ORF2370P |
| 2375 | R | HpyR3cORF5260P (97% identity) | ACGT | Hpy166ORF2370P |
| 2380 | catalase | |||
| 2545 | membrane protein | |||
| 2550 | R | HpyR3cORF5085P (79% identity) | GGCC | Hpy166ORF2550P |
| 2555 | restriction endonuclease | |||
| 3660 | 258 aa hypothetical protein | |||
| 3665 | RM | HpyB8ORF870P (92% identity) | Hpy166ORF3665P | |
| 3670 | glycerol-3-phosphate dehydrogenase | |||
| 4550 | membrane protein | |||
| 4555 | R | HpyR3cORF3315P (99% identity) | GTAC | Hpy166ORF4560P |
| 4560 | M | M.HpyG012X (99% identity) | GTAC | M.Hpy166ORF4560P |
| 4565 | DNA gyrase subunit B | |||
| 5260 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 5265 | M | M.HpyL008ORF6635P (90% identity) | GAATTC | M.Hpy166ORF5265P |
| 5270 | addiction module protein | |||
| 5275 | agmatine deiminase | |||
| ??? | RM | HpySW08ORF475P (83% identity) | Hpy166ORF5280P | |
| 5290 | nicotinate-nucleotide pyrophosphorylase | |||
| 5280 | DNA methyltransferase | |||
| 5285 | RM | Hpy166ORF5280P (68% identity) | Hpy166ORF5285P | |
| 5290 | nicotinate-nucleotide pyrophosphorylase | |||
| 5770 | acetyl-CoA carboxylase | |||
| 5775 | M | M.HpyJ182ORF6315P (97% identity) | TCNNGA | M.Hpy166ORF5775P |
| 5780 | R | Hpy180ORF5345P (98% identity) | TCNNGA | Hpy166ORF5775P |
| 5785 | Laminin subunit alpha-2 precursor | |||
| 5985 | 144 aa hypothetical protein | |||
| 5990 | M | M.HpyU436XI (96% identity) | GCGC | M.Hpy166ORF5990P |
| 5995 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6290 | membrane protein | |||
| 6305 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy166ORF6305P |
| 6310 | R | HpyU408XP (100% identity) | TCNGA | Hpy166ORF6305P |
| 6315 | purine nucleoside phosphorylase | |||
| 6495 | hydrolase | |||
| 6500 | M | M.HpyR3cORF1320P (99% identity) | CATG | M.Hpy166IV |
| ??? | R | HpyB8ORF281P (100% identity) | CATG | Hpy166IVP |
| 6515 | serine acetyltransferase | |||
| 7255 | type II R-M system restriction endonuclease | |||
| 7260 | R | HpyB128KORF570P (98% identity) | Hpy166ORF7255P | |
| 7265 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7575 | DNA polymerase I | |||
| ??? | S | S.HpyOki128ORF6635P (92% identity) | S.Hpy166ORF7590P | |
| 7590 | RM | HpyIS2ORF6885P (98% identity) | Hpy166ORF7590P | |
| 7595 | amidophosphoribosyltransferase | |||
| 7720 | permease | |||
| 7725 | M | M1.HpyR3cORF145P (93% identity) | GATGG | M2.Hpy166ORF7730P |
| 7730 | M | M1.HpyLI20VII (86% identity) | CCATC | M1.Hpy166ORF7730P |
| 7735 | R | HpyR3cORF145P (98% identity) | CCATC | Hpy166ORF7730P |
| 7740 | membrane protein | |||
| 7830 | pseudogene | |||
| 7850 | RM | HpyIR2XIII (74% identity) | Hpy166ORF7850P | |
| 7855 | DEAD/DEAH box helicase | |||
| 8025 | 67 aa hypothetical protein | |||
| 8030 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy166ORF8030P |
| 8035 | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy166ORF8030P |
| 8040 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5340 | chemotaxis protein CheY | |||
| ??? | M | M.HpyPE109ORF6560P (95% identity) | M.Hpy166ORF5345P | |
| 5355 | R | HpyB125AORF695P (95% identity) | Hpy166ORF5345P | |
| 5360 | rod shape-determining protein MreC | |||
| 5410 | endonuclease | |||
| 5415 | M | M.HpyR3cORF7440P (98% identity) | M.Hpy166ORF5415P | |
| 5420 | R | HpyR3cORF7440P (93% identity) | Hpy166ORF5415P | |
| 5430 | biotin synthase | |||
| 7850 | pseudogene | |||
| 7855 | R | HpySP210ORF7150P (95% identity) | Hpy166ORF7860P | |
| ??? | M | M.HpyMT5114ORF7055P (96% identity) | M.Hpy166ORF7860P | |
| 7870 | ATP-dependent DNA helicase RecG | |||