Helicobacter pylori oki898 |
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Putative Helicobacter pylori oki898 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,634,875 bp
GenBank #: CP006827
REBASE acronym: Hpy898
Org_num: 12456
All begin HPOKI898_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2495 | polyphosphate kinase | |||
| 2505 | S | S.HpyJA102ORF2320P (99% identity) | S.Hpy898ORF2510P | |
| 2510 | M | M.HpyOK80ORFQP (100% identity) | M.Hpy898ORF2510P | |
| ??? | R | HpyOK80ORFQP (93% identity) | Hpy898ORF2510P | |
| 2520 | 631 aa hypothetical protein | |||
| 2780 | membrane protein | |||
| 2785 | M | M.HpyOK44ORFVP (99% identity) | M.Hpy898ORF2785P | |
| 2790 | S | S.HpyOK44ORFVP (99% identity) | S.Hpy898ORF2785P | |
| 2795 | R | HpyOK44ORFVP (99% identity) | Hpy898ORF2785P | |
| 2800 | hydroxyethylthiazole kinase | |||
| 3085 | cadmium transporter | |||
| 3090 | S | S.HpyOK44ORFWP (99% identity) | S.Hpy898ORF3090P | |
| 3100 | membrane protein | |||
| 7780 | pseudogene | |||
| 7785 | S | S.HpyTW04XII (97% identity) | S.Hpy898ORF7790P | |
| 7790 | M | M.HpyOK80ORFFP (100% identity) | M.Hpy898ORF7790P | |
| 7795 | R | HpyOki112ORF7795P (99% identity) | Hpy898ORF7790P | |
| 7800 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 285 | DNA methyltransferase | |||
| 290 | M | M.HpyOki112ORF280P (96% identity) | CCTC | M.Hpy898ORF290P |
| 295 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 495 | nicotinate-nucleotide pyrophosphorylase | |||
| 500 | RM | HpyCHN1ORF275P (89% identity) | Hpy898ORF500P | |
| 505 | 42 aa hypothetical protein | |||
| 510 | agmatine deiminase | |||
| 515 | M | M1.HpyKG10V (97% identity) | CCTC | M1.Hpy898ORF515P |
| 520 | M | M2.HpyK035IVP (100% identity) | CCTC | M2.Hpy898ORF515P |
| 525 | R | HpyMA23XP (95% identity) | CCTC | Hpy898ORF515P |
| 530 | type II restriction endonuclease | |||
| 525 | restriction endonuclease | |||
| 530 | M | M.HpyOki112ORF515P (99% identity) | GTSAC | M.Hpy898ORF530P |
| 535 | R | HpyJA104VP (100% identity) | GTSAC | Hpy898ORF530P |
| 540 | type II restriction endonuclease | |||
| 755 | HrgA protein | |||
| 760 | M | M.HpyOK85ORFPP (99% identity) | GATC | M.Hpy898ORF760P |
| 765 | pseudogene | |||
| 1600 | exodeoxyribonuclease VII large subunit | |||
| 1605 | M | M.Hpy102ORF1605P (100% identity) | TCGA | M.Hpy898ORF1605P |
| 1610 | 204 aa hypothetical protein | |||
| 1610 | 204 aa hypothetical protein | |||
| 1615 | R | HpyJA104IIIP (100% identity) | CCGG | Hpy898ORF1620P |
| 1620 | M | M.HpyOK316ORFUP (99% identity) | CCGG | M.Hpy898ORF1620P |
| 1625 | molecular chaperone ClpB | |||
| 1855 | 293 aa hypothetical protein | |||
| 1860 | R | HpyOki112ORF1850P (100% identity) | CTNAG | Hpy898ORF1865P |
| 1865 | M | M.HpyOki112ORF1850P (100% identity) | CTNAG | M.Hpy898ORF1865P |
| 1870 | 122 aa hypothetical protein | |||
| 2055 | elongation factor 4 | |||
| 2060 | M | M.HpyUSU101ORF2045P (100% identity) | GCNGC | M.Hpy898ORF2060P |
| 2065 | 156 aa hypothetical protein | |||
| 2580 | membrane protein | |||
| 2585 | M | M.HpyOK85ORFTP (100% identity) | ATTAAT | M.Hpy898ORF2585P |
| 2590 | glycosyltransferase 9 family protein | |||
| 2595 | GTP-binding protein | |||
| 2600 | M | M.Hpyfe76ORF4780P (99% identity) | ACNGT | M.Hpy898ORF2600P |
| 2605 | R | HpyT001IIP (99% identity) | ACNGT | Hpy898ORF2600P |
| 2610 | DNA methyltransferase | |||
| 2605 | type II restriction endonuclease | |||
| 2610 | M | M.Hpy102ORF2605P (98% identity) | ACGT | M.Hpy898ORF2610P |
| 2615 | R | HpyOK85ORFJP (99% identity) | ACGT | Hpy898ORF2610P |
| 2620 | 71 aa hypothetical protein | |||
| 3670 | pseudogene | |||
| 3675 | RM | HpyJO5ORF4450P (88% identity) | Hpy898ORF3675P | |
| 3680 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 4755 | flagellar hook protein FlgE | |||
| 4760 | R | HpyOK44ORFXP (100% identity) | GTNNAC | Hpy898ORF4765P |
| 4765 | M | M.HpyOki112ORF4800P (100% identity) | GTNNAC | M.Hpy898ORF4765P |
| 4770 | ATP-dependent DNA helicase | |||
| 5695 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 5700 | M | M.Hpyfe120ORF2030P (100% identity) | TCNNGA | M.Hpy898ORF5700P |
| 5705 | R | Hpyfe8ORF4870P (100% identity) | TCNNGA | Hpy898ORF5700P |
| 5710 | Laminin subunit alpha-2 precursor | |||
| 5910 | 144 aa hypothetical protein | |||
| 5915 | M | M.HpyOki112ORF5935P (100% identity) | GCGC | M.Hpy898ORF5915P |
| 5920 | flgM protein | |||
| 6395 | hydrolase | |||
| 6400 | M | M.HpyOki112ORF6410P (100% identity) | CATG | M.Hpy898ORF6400P |
| 6405 | R | HpyOK85ORFCP (98% identity) | CATG | Hpy898ORF6400P |
| 6410 | serine acetyltransferase | |||
| 7145 | pseudogene | |||
| 7150 | R | HpyOki112ORF7155P (100% identity) | GAATTC | Hpy898ORF7150P |
| 7155 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7445 | DNA polymerase I | |||
| 7450 | S | S.HpyOki112ORF7460P (100% identity) | S.Hpy898ORF7455P | |
| 7455 | RM | HpyOki112ORF7460P (99% identity) | Hpy898ORF7455P | |
| 7460 | amidophosphoribosyltransferase | |||
| 7695 | 97 aa hypothetical protein | |||
| 7710 | RM | HpyP87ORFOP (86% identity) | Hpy898ORF7710P | |
| 7715 | DEAD/DEAH box helicase | |||
| 7880 | 68 aa hypothetical protein | |||
| 7885 | M | M.HpyOki112ORF7890P (100% identity) | TGCA | M.Hpy898ORF7885P |
| 7890 | R | HpyOki112ORF7890P (100% identity) | TGCA | Hpy898ORF7885P |
| 7895 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 365 | biotin synthase | |||
| 370 | R | HpyOK316ORFDP (92% identity) | Hpy898ORF375P | |
| 375 | M | M.HpyF227ORFXP (97% identity) | M.Hpy898ORF375P | |
| 380 | endonuclease | |||
| 430 | rod shape-determining protein MreC | |||
| 435 | R | HpyOki112ORF425P (100% identity) | Hpy898ORF440P | |
| 440 | M | M.HpySH010ORF6725P (95% identity) | M.Hpy898ORF440P | |
| 445 | chemotaxis protein CheY | |||
| 7710 | type IIS restriction-modification protein | |||
| 7715 | R | HpyOki112ORF7725P (99% identity) | Hpy898ORF7720P | |
| 7720 | M | M.HpyJA108ORF7020P (98% identity) | M.Hpy898ORF7720P | |
| 7725 | ATP-dependent DNA helicase RecG | |||