Helicobacter pylori oki828 |
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Putative Helicobacter pylori oki828 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,600,345 bp
GenBank #: CP006826
REBASE acronym: Hpy828
Org_num: 12455
All begin HPOKI828_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2280 | polyphosphate kinase | |||
| 2290 | S | S.Hpy154ORF2310P (99% identity) | S.Hpy828ORF2295P | |
| 2295 | M | M.Hpy673ORF2300P (97% identity) | M.Hpy828ORF2295P | |
| 2300 | R | Hpy154ORF2310P (97% identity) | Hpy828ORF2295P | |
| 2305 | 631 aa hypothetical protein | |||
| 3995 | pseudogene | |||
| 4000 | S | S.Hpy673ORF4000P (98% identity) | S.Hpy828ORF4000P | |
| 4005 | cadmium transporter | |||
| 4315 | 38 aa hypothetical protein | |||
| 4320 | R | HpyOki128ORF4085P (98% identity) | Hpy828ORF4330P | |
| 4325 | S | S.HpyNCI32ORFSP (93% identity) | S.Hpy828ORF4330P | |
| 4330 | M | M.HpyJA105ORF3495P (98% identity) | M.Hpy828ORF4330P | |
| 4335 | membrane protein | |||
| 7150 | 31 aa hypothetical protein | |||
| 7155 | S | S.Hpy673ORF7135P (100% identity) | S.Hpy828ORF7155P | |
| 7160 | formyltetrahydrofolate deformylase | |||
| 7685 | FAD-dependent thymidylate synthase | |||
| 7690 | S | S.Hpy673ORF7675P (100% identity) | S.Hpy828ORF7695P | |
| 7695 | M | M.Hpy154ORF7685P (99% identity) | M.Hpy828ORF7695P | |
| 7700 | R | Hpy154ORF7685P (98% identity) | Hpy828ORF7695P | |
| 7705 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | 177 aa hypothetical protein | |||
| 285 | R | Hpy673ORF290P (100% identity) | TGCA | Hpy828ORF290P |
| 290 | M | 38 aa hypothetical protein | TGCA | M.Hpy828ORF290P |
| 295 | transposase IS605 | |||
| 300 | transposase IS200 | |||
| 305 | M | 134 aa hypothetical protein | CCTC | M.Hpy828ORF305P |
| ??? | R | Hpy673ORF305P (100% identity) | CCTC | Hpy828ORF305P |
| 315 | pseudogene | |||
| 525 | malonyl CoA-ACP transacylase | |||
| 535 | R | HpyOK95ORFLP (100% identity) | GATC | Hpy828ORF540P |
| 540 | M | M.HpyOK95ORFLP (100% identity) | GATC | M.Hpy828ORF540P |
| 545 | pseudogene | |||
| 1405 | exodeoxyribonuclease VII large subunit | |||
| 1410 | M | M.Hpy673ORF1415P (100% identity) | TCGA | M.Hpy828ORF1410P |
| 1415 | 203 aa hypothetical protein | |||
| 1415 | 203 aa hypothetical protein | |||
| 1420 | R | Hpyfe29ORF5810P (99% identity) | CCGG | Hpy828ORF1425P |
| 1425 | M | M.HpySG32III (100% identity) | CCGG | M.Hpy828ORF1425P |
| 1430 | molecular chaperone ClpB | |||
| 1660 | 293 aa hypothetical protein | |||
| 1665 | R | HpyF233ORFMP (99% identity) | CTNAG | Hpy828ORF1670P |
| 1670 | M | M.Hpyfe2ORF5685P (99% identity) | CTNAG | M.Hpy828ORF1670P |
| 1675 | 125 aa hypothetical protein | |||
| 2370 | membrane protein | |||
| 2375 | M | M.Hpy673ORF2380P (99% identity) | ATTAAT | M.Hpy828ORF2375P |
| 2380 | glycosyltransferase 9 family protein | |||
| 2385 | GTP-binding protein | |||
| 2390 | M | M.HpyJA106II (100% identity) | ACNGT | M.Hpy828ORF2390P |
| 2395 | R | Hpy673ORF2395P (100% identity) | ACNGT | Hpy828ORF2390P |
| 2400 | type II restriction endonuclease | |||
| 2395 | type II restriction endonuclease | |||
| 2400 | M | type II restriction endonuclease | ACGT | M.Hpy828ORF2400P |
| 2405 | 36 aa hypothetical protein | |||
| 2595 | integrase | |||
| ??? | M | DNA methyltransferase | ACGT | M.Hpy828ORF2600P |
| ??? | R | Hpyfe110ORF5235P (57% identity) | ACGT | Hpy828ORF2600P |
| 2610 | catalase | |||
| 2710 | DNA gyrase subunit B | |||
| 2715 | M | M.HpyOK314ORFVP (98% identity) | GTAC | M.Hpy828ORF2715P |
| 2720 | R | HpyJ017XP (98% identity) | GTAC | Hpy828ORF2715P |
| 2725 | membrane protein | |||
| 3395 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 3400 | RM | HpyOki128ORF3185P (97% identity) | Hpy828ORF3400P | |
| 3405 | membrane protein | |||
| 3490 | polysaccharide biosynthesis protein | |||
| 3495 | M | M.HpyOki128ORF3270P (100% identity) | CCNNGG | M.Hpy828ORF3495P |
| 3500 | R | Hpy154ORF3500P (100% identity) | CCNNGG | Hpy828ORF3495P |
| 3505 | polysaccharide biosynthesis protein | |||
| 4610 | flagellar hook protein FlgE | |||
| 4615 | R | HpyOki128ORF4365P (99% identity) | GTNNAC | Hpy828ORF4620P |
| 4620 | M | M.HpyOki128ORF4365P (99% identity) | GTNNAC | M.Hpy828ORF4620P |
| 4625 | ATP-dependent DNA helicase | |||
| 5385 | biotin carboxylase | |||
| 5390 | M | M.Hpy673ORF5380P (100% identity) | TCNNGA | M.Hpy828ORF5390P |
| 5395 | R | Hpy673ORF5380P (100% identity) | TCNNGA | Hpy828ORF5390P |
| 5400 | Laminin subunit alpha-2 precursor | |||
| 5575 | 144 aa hypothetical protein | |||
| 5580 | M | M.HpyJA106XIV (100% identity) | GCGC | M.Hpy828ORF5580P |
| 5585 | flgM protein | |||
| 6085 | hydrolase | |||
| 6090 | M | M.HpyOki128ORF5810P (99% identity) | CATG | M.Hpy828ORF6090P |
| 6095 | 59 aa hypothetical protein | |||
| 6845 | peptidase S41 | |||
| 6850 | R | HpyJA106ORF290P (100% identity) | GANTC | Hpy828ORF6850P |
| 6855 | DNA methyltransferase | |||
| 6850 | type II restriction endonuclease | |||
| 6855 | M | M.Hpy154ORF6845P (100% identity) | GANTC | M.Hpy828ORF6855P |
| 6860 | RM | HpyJA114ORF255P (92% identity) | Hpy828ORF6855P | |
| 6865 | nicotinate-nucleotide pyrophosphorylase | |||
| 7060 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7065 | M | M.Hpy673ORF7045P (100% identity) | GAATTC | M.Hpy828ORF7065P |
| 7070 | R | HpyOK95ORFVP (100% identity) | GAATTC | Hpy828ORF7065P |
| 7075 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7365 | DNA polymerase I | |||
| 7370 | S | S2.HpyOK313ORFFP (93% identity) | S.Hpy828ORF7375P | |
| 7375 | RM | Hpy38ORF1425P (96% identity) | Hpy828ORF7375P | |
| 7380 | amidophosphoribosyltransferase | |||
| 7505 | permease | |||
| 7510 | M | M1.HpyJA106IV (100% identity) | GATGG | M1.Hpy828ORF7510P |
| 7515 | M | M2.Hpy673ORF7490P (99% identity) | CCATC | M2.Hpy828ORF7510P |
| 7520 | R | Hpy673ORF7490P (99% identity) | CCATC | Hpy828ORF7510P |
| 7525 | membrane protein | |||
| 7615 | 178 aa hypothetical protein | |||
| ??? | RM | Hpy154ORF7610P (98% identity) | Hpy828ORF7620P | |
| 7625 | DEAD/DEAH box helicase | |||
| 7780 | 68 aa hypothetical protein | |||
| 7785 | M | M.Hpyfe92ORF7690P (76% identity) | TGCA | M.Hpy828ORF7785P |
| 7790 | DNA methyltransferase | |||
| 7785 | type II methylase | |||
| 7790 | M | M2.HpyOki128ORF6200P (100% identity) | CCTC | M2.Hpy828ORF7790P |
| 7795 | M | M1.HpyJA105V (100% identity) | CCTC | M1.Hpy828ORF7790P |
| 7800 | agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4140 | 145 aa hypothetical protein | |||
| 4145 | R | Hpy673ORF4150P (99% identity) | Hpy828ORF4150P | |
| 4150 | M | M.HpyJA105ORF3655P (98% identity) | M.Hpy828ORF4150P | |
| 4155 | osmoprotection protein (proWX) | |||
| 6980 | endonuclease | |||
| 6985 | M | M.Hpy154ORF6975P (99% identity) | M.Hpy828ORF6985P | |
| 6990 | R | HpyK110ORF6605P (94% identity) | Hpy828ORF6985P | |
| 6995 | type III restriction endonuclease subunit R | |||
| ??? | 1180 aa hypothetical protein | |||
| 7625 | R | HpyOK95ORFEP (100% identity) | Hpy828ORF7630P | |
| 7630 | M | M.HpyGU83AORFEP (98% identity) | M.Hpy828ORF7630P | |
| 7635 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2760 | glutamine synthetase | |||
| 2765 | R | Hpy673GmrSDP (90% identity) | Hpy828GmrSDP | |
| 2770 | 50S ribosomal protein L9 | |||