Helicobacter pylori oki673 |
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Putative Helicobacter pylori oki673 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,595,058 bp
GenBank #: CP006825
REBASE acronym: Hpy673
Org_num: 12454
All begin HPOKI673_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2285 | polyphosphate kinase | |||
| 2295 | S | S.HpyJA105ORF5230P (99% identity) | S.Hpy673ORF2300P | |
| 2300 | M | M.HpyF20JORF793P (97% identity) | M.Hpy673ORF2300P | |
| 2305 | R | HpyF209ORF467P (95% identity) | Hpy673ORF2300P | |
| 2310 | 631 aa hypothetical protein | |||
| 3995 | pseudogene | |||
| 4000 | S | S.Hpy828ORF4000P (98% identity) | S.Hpy673ORF4000P | |
| 4005 | cadmium transporter | |||
| 4310 | hydroxyethylthiazole kinase | |||
| 4315 | R | Hpy154ORF4345P (99% identity) | Hpy673ORF4325P | |
| 4320 | S | S.HpyK014ORF2855P (95% identity) | S.Hpy673ORF4325P | |
| 4325 | M | M.Hpy154ORF4345P (96% identity) | M.Hpy673ORF4325P | |
| 4330 | membrane protein | |||
| 7130 | 31 aa hypothetical protein | |||
| 7135 | S | S.Hpy828ORF7155P (100% identity) | S.Hpy673ORF7135P | |
| 7140 | formyltetrahydrofolate deformylase | |||
| 7665 | FAD-dependent thymidylate synthase | |||
| 7670 | S | S.Hpy828ORF7695P (100% identity) | S.Hpy673ORF7675P | |
| 7675 | M | M.Hpy154ORF7685P (98% identity) | M.Hpy673ORF7675P | |
| 7680 | R | HpyOK95ORFFP (97% identity) | Hpy673ORF7675P | |
| 7685 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | 177 aa hypothetical protein | |||
| 285 | R | Hpy828ORF290P (100% identity) | TGCA | Hpy673ORF290P |
| 290 | M | 38 aa hypothetical protein | TGCA | M.Hpy673ORF290P |
| 295 | transposase IS605 | |||
| 300 | transposase IS200 | |||
| 305 | M | DNA methyltransferase | CCTC | M.Hpy673ORF305P |
| ??? | R | Hpy828ORF305P (100% identity) | CCTC | Hpy673ORF305P |
| 315 | pseudogene | |||
| 525 | pseudogene | |||
| 535 | R | HpyOK95ORFLP (100% identity) | GATC | Hpy673ORF540P |
| 540 | M | M.HpyOK95ORFLP (100% identity) | GATC | M.Hpy673ORF540P |
| 545 | alpha-1,2-fucosyltransferase | |||
| 1410 | exodeoxyribonuclease VII large subunit | |||
| 1415 | M | M.Hpy828ORF1410P (100% identity) | TCGA | M.Hpy673ORF1415P |
| 1420 | 203 aa hypothetical protein | |||
| 1420 | 203 aa hypothetical protein | |||
| 1425 | R | HpyJA105ORF6075P (98% identity) | CCGG | Hpy673ORF1430P |
| 1430 | M | M.HpyP30ORFAP (100% identity) | CCGG | M.Hpy673ORF1430P |
| 1435 | molecular chaperone ClpB | |||
| 1665 | 293 aa hypothetical protein | |||
| 1670 | R | Hpy154ORF1685P (99% identity) | CTNAG | Hpy673ORF1675P |
| 1675 | M | M.HpyOK68ORFMP (100% identity) | CTNAG | M.Hpy673ORF1675P |
| 1680 | 125 aa hypothetical protein | |||
| 2375 | membrane protein | |||
| 2380 | M | M.Hpy154ORF2390P (100% identity) | ATTAAT | M.Hpy673ORF2380P |
| 2385 | glycosyltransferase 9 family protein | |||
| 2390 | GTP-binding protein | |||
| 2395 | M | M.HpyJA106II (100% identity) | ACNGT | M.Hpy673ORF2395P |
| 2400 | R | Hpy828ORF2390P (100% identity) | ACNGT | Hpy673ORF2395P |
| 2405 | type II restriction endonuclease | |||
| 2400 | type II restriction endonuclease | |||
| 2405 | M | type II restriction endonuclease | ACGT | M.Hpy673ORF2405P |
| 2410 | 36 aa hypothetical protein | |||
| 2590 | integrase | |||
| ??? | M | M.HpyMA08ORF2320P (69% identity) | ACGT | M.Hpy673ORFBP |
| 2600 | pseudogene | |||
| 2705 | DNA gyrase subunit B | |||
| 2710 | M | M.Hpy154ORF2735P (99% identity) | M.Hpy673ORF2710P | |
| 2715 | R | Hpy154ORF2735P (100% identity) | Hpy673ORF2710P | |
| 2720 | membrane protein | |||
| 3385 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | Hpy154ORFAP (82% identity) | Hpy673ORF3390P | |
| 3395 | 205 aa hypothetical protein | |||
| 4610 | flagellar hook protein FlgE | |||
| 4615 | R | HpyOki128ORF4365P (100% identity) | GTNNAC | Hpy673ORF4620P |
| 4620 | M | M.HpyJA107IX (100% identity) | GTNNAC | M.Hpy673ORF4620P |
| 4625 | ATP-dependent DNA helicase | |||
| 5375 | biotin carboxylase | |||
| 5380 | M | M.Hpy828ORF5390P (100% identity) | TCNNGA | M.Hpy673ORF5380P |
| 5385 | R | Hpy828ORF5390P (100% identity) | TCNNGA | Hpy673ORF5380P |
| 5390 | Laminin subunit alpha-2 precursor | |||
| 5565 | 144 aa hypothetical protein | |||
| 5570 | M | M.HpyJA106XIV (100% identity) | GCGC | M.Hpy673ORF5570P |
| 5575 | flgM protein | |||
| 6060 | hydrolase | |||
| 6065 | M | M.Hpy154ORF6085P (100% identity) | CATG | M.Hpy673ORF6065P |
| 6070 | 59 aa hypothetical protein | |||
| 6820 | peptidase S41 | |||
| 6825 | R | HpyOK308ORFJP (96% identity) | GANTC | Hpy673ORF6830P |
| 6830 | M | M.HpyJA106ORF290P (99% identity) | GANTC | M.Hpy673ORF6830P |
| 6835 | DNA methyltransferase | |||
| 6835 | DNA methyltransferase | |||
| 6840 | RM | HpyJA105ORF635P (91% identity) | Hpy673ORF6840P | |
| 6845 | nicotinate-nucleotide pyrophosphorylase | |||
| 7040 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7045 | M | M.Hpy828ORF7065P (100% identity) | GAATTC | M.Hpy673ORF7045P |
| 7050 | R | HpyOK95ORFVP (100% identity) | GAATTC | Hpy673ORF7045P |
| 7055 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7345 | DNA polymerase I | |||
| 7350 | S | S.HpyPF16ORF6895P (45% identity) | S.Hpy673ORF7355P | |
| 7355 | RM | Hpy828ORF7375P (86% identity) | Hpy673ORF7355P | |
| 7360 | amidophosphoribosyltransferase | |||
| 7485 | permease | |||
| 7490 | M | M1.HpyJA106IV (99% identity) | GATGG | M1.Hpy673ORF7490P |
| 7495 | M | M2.Hpy154ORF7500P (100% identity) | CCATC | M2.Hpy673ORF7490P |
| 7500 | R | Hpy154ORF7500P (100% identity) | CCATC | Hpy673ORF7490P |
| 7505 | membrane protein | |||
| 7595 | 178 aa hypothetical protein | |||
| ??? | RM | Hpy154ORF7610P (99% identity) | Hpy673ORFAP | |
| 7605 | DEAD/DEAH box helicase | |||
| 7760 | 68 aa hypothetical protein | |||
| 7765 | M | M.Hpy154ORF7780P (98% identity) | TGCA | M.Hpy673ORF7765P |
| 7770 | DNA methyltransferase | |||
| 7765 | type II methylase | |||
| 7770 | M | M2.HpyPU006ORF255P (65% identity) | CCTC | M2.Hpy673ORF7770P |
| 7775 | M | M1.HpyME02IX (97% identity) | CCTC | M1.Hpy673ORF7770P |
| 7780 | agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4140 | 145 aa hypothetical protein | |||
| 4145 | R | Hpy154ORF4165P (99% identity) | Hpy673ORF4150P | |
| 4150 | M | M.HpyF219ORFBP (97% identity) | M.Hpy673ORF4150P | |
| 4155 | pseudogene | |||
| 6955 | endonuclease | |||
| 6960 | M | M.Hpy154ORF6975P (99% identity) | M.Hpy673ORF6960P | |
| 6965 | R | Hpy154ORF6975P (99% identity) | Hpy673ORF6960P | |
| 6970 | type III restriction endonuclease subunit R | |||
| ??? | 1180 aa hypothetical protein | |||
| 7605 | R | HpyOK95ORFEP (99% identity) | Hpy673ORF7605P | |
| 7610 | M | M.HpyJA105ORF1355P (99% identity) | M.Hpy673ORF7605P | |
| 7615 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2755 | glutamine synthetase | |||
| 2760 | R | Hpy828GmrSDP (90% identity) | Hpy673GmrSDP | |
| 2765 | 50S ribosomal protein L9 | |||