Helicobacter pylori oki128 |
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Putative Helicobacter pylori oki128 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,553,826 bp
GenBank #: CP006822
REBASE acronym: HpyOki128
Org_num: 12451
All begin HPOKI128_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2280 | polyphosphate kinase | |||
| 2290 | S | S.HpyOK36ORFEP (99% identity) | S.HpyOki128ORF2295P | |
| 2295 | M | M.HpyOK36ORFEP (100% identity) | M.HpyOki128ORF2295P | |
| 2300 | R | HpyJA105ORF5230P (98% identity) | HpyOki128ORF2295P | |
| 2305 | 631 aa hypothetical protein | |||
| 3770 | 30 aa hypothetical protein | |||
| 3775 | S | S.Hpy63ORF581P (98% identity) | S.HpyOki128ORF3775P | |
| 3780 | cadmium transporter | |||
| 4070 | hydroxyethylthiazole kinase | |||
| 4075 | R | HpyJA105ORF3495P (99% identity) | HpyOki128ORF4085P | |
| 4080 | S | S.HpyK118ORF4340P (100% identity) | S.HpyOki128ORF4085P | |
| 4085 | M | M.HpyJA105ORF3495P (99% identity) | M.HpyOki128ORF4085P | |
| 4090 | membrane protein | |||
| 6295 | metal-dependent hydrolase | |||
| 6300 | R | HpyOK36ORFQP (99% identity) | HpyOki128ORF6305P | |
| 6305 | M | M.HpyK041XII (97% identity) | M.HpyOki128ORF6305P | |
| 6310 | S | S.HpyOK36ORFQP (99% identity) | S.HpyOki128ORF6305P | |
| 6315 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 285 | pseudogene | |||
| 290 | M | 38 aa hypothetical protein | TGCA | M.HpyOki128ORF290P |
| 295 | pseudogene | |||
| 300 | transposase IS200 | |||
| 305 | M | M.Hpy673ORF305P (94% identity) | CCTC | M.HpyOki128ORF305P |
| 310 | R | HpyJA105ORF7120P (99% identity) | CCTC | HpyOki128ORF305P |
| 315 | pseudogene | |||
| 540 | pseudogene | |||
| 545 | M | M.HpyOK36ORFGP (99% identity) | GATC | M.HpyOki128ORF545P |
| 550 | pseudogene | |||
| 1420 | exodeoxyribonuclease VII large subunit | |||
| 1425 | M | M.HpyUM032XVII (98% identity) | TCGA | M.HpyOki128ORF1425P |
| 1430 | pseudogene | |||
| 1435 | pseudogene | |||
| 1440 | M | M.HpyOK36ORFAP (100% identity) | CCGG | M.HpyOki128ORF1440P |
| 1445 | pseudogene | |||
| 2370 | membrane protein | |||
| 2375 | M | M.HpyJA105ORF5155P (99% identity) | ATTAAT | M.HpyOki128ORF2375P |
| 2380 | glycosyltransferase 9 family protein | |||
| 2385 | GTP-binding protein | |||
| 2390 | M | M.HpyJA105II (100% identity) | ACNGT | M.HpyOki128ORF2390P |
| 2395 | R | HpyJA105IIP (100% identity) | ACNGT | HpyOki128ORF2390P |
| 2400 | DNA methyltransferase | |||
| 2395 | type II restriction endonuclease | |||
| 2400 | M | DNA methyltransferase | ACGT | M1.HpyOki128ORF2400P |
| 2405 | M | DNA-cytosine methyltransferase | ACGT | M2.HpyOki128ORF2400P |
| 2410 | pseudogene | |||
| 2515 | DNA gyrase subunit B | |||
| 2520 | M | M.HpyOK36ORFCP (98% identity) | GTAC | M.HpyOki128ORF2520P |
| 2525 | R | HpyJA105IXP (97% identity) | HpyOki128ORF2520P | |
| 2530 | membrane protein | |||
| 3180 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 3185 | RM | HpyOK36ORFYP (99% identity) | HpyOki128ORF3185P | |
| 3190 | membrane protein | |||
| 3265 | polysaccharide biosynthesis protein | |||
| 3270 | M | M.HpyOki112ORF3605P (100% identity) | CCNNGG | M.HpyOki128ORF3270P |
| 3275 | R | HpyOki112ORF3605P (100% identity) | CCNNGG | HpyOki128ORF3270P |
| 3280 | polysaccharide biosynthesis protein | |||
| 4355 | flagellar hook protein FlgE | |||
| 4360 | R | HpyOK36ORFUP (100% identity) | GTNNAC | HpyOki128ORF4365P |
| 4365 | M | M.Hpy828ORF4620P (99% identity) | GTNNAC | M.HpyOki128ORF4365P |
| 4370 | ATP-dependent DNA helicase | |||
| 5105 | biotin carboxylase | |||
| 5110 | M | M.HpyOK36ORFTP (100% identity) | TCNNGA | M.HpyOki128ORF5110P |
| 5115 | R | HpyOK36ORFTP (86% identity) | TCNNGA | HpyOki128ORF5110P |
| 5120 | Laminin subunit alpha-2 precursor | |||
| 5295 | 144 aa hypothetical protein | |||
| 5300 | M | M.HpyJA106XIV (98% identity) | GCGC | M.HpyOki128ORF5300P |
| 5305 | flgM protein | |||
| 5805 | hydrolase | |||
| 5810 | M | M.HpyOK36ORFRP (93% identity) | CATG | M.HpyOki128ORF5810P |
| 5815 | serine acetyltransferase | |||
| 6195 | agmatine deiminase | |||
| 6200 | M | M1.HpyJA105V (99% identity) | CCTC | M1.HpyOki128ORF6200P |
| 6205 | M | M2.Hpy828ORF7790P (100% identity) | CCTC | M2.HpyOki128ORF6200P |
| 6210 | type II methylase | |||
| 6205 | DNA methyltransferase | |||
| 6210 | M | M.HpyJA105ORF1510P (99% identity) | TGCA | M.HpyOki128ORF6210P |
| 6215 | 68 aa hypothetical protein | |||
| 6380 | DEAD/DEAH box helicase | |||
| 6385 | RM | Hpyfe86ORF55P (74% identity) | HpyOki128ORF6385P | |
| 6390 | 115 aa hypothetical protein | |||
| 6485 | membrane protein | |||
| 6490 | R | HpyJA105IIIP (100% identity) | CCATC | HpyOki128ORF6495P |
| 6495 | M | M2.HpyJ019VII (98% identity) | CCATC | M2.HpyOki128ORF6495P |
| 6500 | M | M1.Hpy70ORF1462P (99% identity) | GATGG | M1.HpyOki128ORF6495P |
| 6505 | permease | |||
| 6630 | amidophosphoribosyltransferase | |||
| ??? | RM | HpyJA105ORF1110P (100% identity) | HpyOki128ORF6635P | |
| ??? | S | S.Hpy166ORF7590P (92% identity) | S.HpyOki128ORF6635P | |
| 6640 | DNA polymerase I | |||
| 6925 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 6930 | R | HpyOK36ORFMP (100% identity) | GAATTC | HpyOki128ORF6935P |
| 6935 | M | M.HpyOK36ORFMP (100% identity) | GAATTC | M.HpyOki128ORF6935P |
| 6940 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7125 | nicotinate-nucleotide pyrophosphorylase | |||
| 7130 | RM | HpyOK36ORFJP (91% identity) | HpyOki128ORF7130P | |
| 7135 | DNA methyltransferase | |||
| 7130 | DNA methyltransferase | |||
| 7135 | M | M.HpyOK36ORFKP (100% identity) | GANTC | M.HpyOki128ORF7135P |
| 7140 | R | HpyOK36ORFKP (100% identity) | GANTC | HpyOki128ORF7135P |
| 7145 | peptidase S41 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3910 | 145 aa hypothetical protein | |||
| 3915 | R | HpyJA105ORF3655P (99% identity) | HpyOki128ORF3920P | |
| 3920 | M | M.HpyOK36ORFVP (100% identity) | M.HpyOki128ORF3920P | |
| 3925 | osmoprotection protein (proWX) | |||
| 6370 | ATP-dependent DNA helicase RecG | |||
| 6375 | M | M.HpyUM038ORF805P (97% identity) | M.HpyOki128ORF6375P | |
| 6380 | DEAD/DEAH box helicase | |||
| 6375 | type II restriction endonuclease | |||
| 6380 | R | HpyOK36ORFPP (98% identity) | HpyOki128ORF6380P | |
| 6385 | type II S restriction-modification protein | |||
| 7000 | type III restriction endonuclease subunit R | |||
| 7005 | R | HpyJA105ORF755P (93% identity) | HpyOki128ORF7000P | |
| 7010 | M | M.HpyJA105ORF755P (99% identity) | M.HpyOki128ORF7000P | |
| 7015 | endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2560 | glutamine synthetase | |||
| 2565 | R | HpyJA105GmrSDP (99% identity) | HpyOki128GmrSDP | |
| 2570 | 50S ribosomal protein L9 | |||