Helicobacter pylori oki112 |
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Putative Helicobacter pylori oki112 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,637,925 bp
GenBank #: CP006821
REBASE acronym: HpyOki112
Org_num: 12450
All begin HPOKI112_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2480 | polyphosphate kinase | |||
| 2490 | S | S.HpyOK85ORFSP (100% identity) | S.HpyOki112ORF2495P | |
| 2495 | M | M.HpyOK80ORFQP (99% identity) | M.HpyOki112ORF2495P | |
| 2500 | R | HpyBR12XIP (99% identity) | HpyOki112ORF2495P | |
| 2505 | 631 aa hypothetical protein | |||
| 2770 | membrane protein | |||
| 2775 | M | M.HpyOK85ORFUP (95% identity) | M.HpyOki112ORF2775P | |
| 2780 | S | S.HpyMM08ORF4005P (97% identity) | S.HpyOki112ORF2775P | |
| 2785 | R | HpyCA20VP (94% identity) | HpyOki112ORF2775P | |
| 2790 | hydroxyethylthiazole kinase | |||
| 3075 | cadmium transporter | |||
| 3080 | S | S.Hpyfe37ORF4250P (95% identity) | S.HpyOki112ORF3080P | |
| 3090 | membrane protein | |||
| 7785 | cag pathogenicity island protein | |||
| 7790 | S | S.HpyK020ORF7515P (86% identity) | S.HpyOki112ORF7795P | |
| 7795 | M | M.HpyOK80ORFFP (99% identity) | M.HpyOki112ORF7795P | |
| 7800 | R | HpyOK80ORFFP (100% identity) | HpyOki112ORF7795P | |
| 7805 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 275 | DNA methyltransferase | |||
| ??? | M | M.HpyOK85ORFMP (100% identity) | GAATTC | M.HpyOki112ORF280P |
| 285 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 480 | nicotinate-nucleotide pyrophosphorylase | |||
| 485 | RM | HpyL018ORF6635P (88% identity) | HpyOki112ORF485P | |
| 490 | 42 aa hypothetical protein | |||
| 495 | agmatine deiminase | |||
| 500 | M | M1.HpyOK79ORFJP (100% identity) | CCTC | M1.HpyOki112ORF500P |
| 505 | M | M2.HpyOK79ORFJP (100% identity) | CCTC | M2.HpyOki112ORF500P |
| 510 | R | HpyOK85ORFKP (99% identity) | HpyOki112ORF500P | |
| 515 | type II restriction endonuclease | |||
| 510 | type II DNA modification enzyme | |||
| 515 | M | M.HpyOK85ORFOP (100% identity) | GTSAC | M.HpyOki112ORF515P |
| 520 | R | HpyOK85ORFOP (99% identity) | GTSAC | HpyOki112ORF515P |
| 525 | type II restriction endonuclease | |||
| 740 | HrgA protein | |||
| 745 | M | M.HpyOK308ORFXP (99% identity) | GATC | M.HpyOki112ORF745P |
| 750 | pseudogene | |||
| 1595 | exodeoxyribonuclease VII large subunit | |||
| 1600 | R | Hpy422ORF1610P (99% identity) | CCGG | HpyOki112ORF1605P |
| 1605 | M | M.HpyOK85ORFAP (100% identity) | CCGG | M.HpyOki112ORF1605P |
| 1610 | molecular chaperone ClpB | |||
| 1840 | 293 aa hypothetical protein | |||
| 1845 | R | HpyJA104IVP (100% identity) | CTNAG | HpyOki112ORF1850P |
| 1850 | M | M.HpyOK85ORFQP (100% identity) | CTNAG | M.HpyOki112ORF1850P |
| 1855 | 122 aa hypothetical protein | |||
| 2040 | elongation factor 4 | |||
| 2045 | M | M.HpyUSU101ORF2045P (100% identity) | GCNGC | M.HpyOki112ORF2045P |
| 2050 | 156 aa hypothetical protein | |||
| 2565 | membrane protein | |||
| 2570 | M | M.HpyOK68ORFOP (98% identity) | ATTAAT | M.HpyOki112ORF2570P |
| 2575 | glycosyltransferase 9 family protein | |||
| 2580 | GTP-binding protein | |||
| 2585 | M | M.HpyOK312ORFIP (99% identity) | ACNGT | M.HpyOki112ORF2585P |
| 2590 | R | HpyOK312ORFIP (100% identity) | ACNGT | HpyOki112ORF2585P |
| ??? | DNA methyltransferase | |||
| 2590 | type II restriction endonuclease | |||
| ??? | M | M.HpyJA106ORF2445P (99% identity) | ACGT | M.HpyOki112ORF2595P |
| 2605 | R | HpyJA106ORF2445P (99% identity) | ACGT | HpyOki112ORF2595P |
| 2610 | pseudogene | |||
| 3595 | polysaccharide biosynthesis protein | |||
| 3600 | R | HpyOki128ORF3270P (100% identity) | CCNNGG | HpyOki112ORF3605P |
| 3605 | M | M.HpyOki128ORF3270P (100% identity) | CCNNGG | M.HpyOki112ORF3605P |
| 3610 | polysaccharide biosynthesis protein | |||
| 3700 | 485 aa hypothetical protein | |||
| ??? | RM | HpyJA102ORF3445BP (90% identity) | HpyOki112ORF3705P | |
| 3710 | pseudogene | |||
| 4790 | flagellar hook protein FlgE | |||
| 4795 | R | HpyOK44ORFXP (99% identity) | GTNNAC | HpyOki112ORF4800P |
| 4800 | M | M.HpyBR12VIII (100% identity) | GTNNAC | M.HpyOki112ORF4800P |
| 4805 | ATP-dependent DNA helicase | |||
| 5720 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 5725 | M | M.HpyOK79ORFXP (100% identity) | TCNNGA | M.HpyOki112ORF5725P |
| 5730 | R | HpyOK85ORFWP (90% identity) | HpyOki112ORF5725P | |
| 5735 | Laminin subunit alpha-2 precursor | |||
| 5930 | 144 aa hypothetical protein | |||
| 5935 | M | M.Hpy898ORF5915P (100% identity) | GCGC | M.HpyOki112ORF5935P |
| 5940 | flgM protein | |||
| 6405 | hydrolase | |||
| 6410 | M | M.HpyOK85ORFCP (100% identity) | CATG | M.HpyOki112ORF6410P |
| 6415 | pseudogene | |||
| 7150 | pseudogene | |||
| 7155 | R | HpyOK85ORFDP (100% identity) | HpyOki112ORF7155P | |
| 7160 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7450 | DNA polymerase I | |||
| 7455 | S | S.HpyJA102ORF7060P (100% identity) | S.HpyOki112ORF7460P | |
| 7460 | RM | HpyOK80ORFCP (100% identity) | HpyOki112ORF7460P | |
| 7465 | amidophosphoribosyltransferase | |||
| 7700 | 97 aa hypothetical protein | |||
| ??? | RM | HpyJA102XII (99% identity) | HpyOki112ORF7710P | |
| 7720 | DEAD/DEAH box helicase | |||
| 7885 | 68 aa hypothetical protein | |||
| 7890 | M | M.HpyOK85ORFHP (100% identity) | TGCA | M.HpyOki112ORF7890P |
| 7895 | R | HpyOK85ORFHP (100% identity) | TGCA | HpyOki112ORF7890P |
| 7900 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 350 | biotin synthase | |||
| 355 | R | Hpy422ORF370P (91% identity) | HpyOki112ORF360P | |
| 360 | M | methylase | M.HpyOki112ORF360P | |
| 365 | endonuclease | |||
| 415 | rod shape-determining protein MreC | |||
| 420 | R | Hpy898ORF440P (100% identity) | HpyOki112ORF425P | |
| 425 | M | M.HpyOK85ORFNP (99% identity) | M.HpyOki112ORF425P | |
| 430 | chemotaxis protein CheY | |||
| ??? | 1176 aa hypothetical protein | |||
| 7720 | R | HpyOK80ORFEP (100% identity) | HpyOki112ORF7725P | |
| 7725 | M | M.HpyOK80ORFEP (100% identity) | M.HpyOki112ORF7725P | |
| 7730 | ATP-dependent DNA helicase RecG | |||