Yersinia enterocolitica LC20 |
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Putative Yersinia enterocolitica LC20 RM systems
Ref: Shi,G. et al. unpublished
REBASE ref # 17475
| Sequence length: | GenBank #: | |
| Chromosome: | 4,722,762 bp | CP007448 |
| plasmid plasmid1_80K: | 78,924 bp | CP007449 |
REBASE acronym: Yen20
Org_num: 12676
All begin LC20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6275 | 5-nucleotidase | |||
| 65 | S | S.Ykr60539ORF13225P (100% identity) | S.Yen20ORF67P | |
| 67 | M | N-6 DNA methylase | M.Yen20ORF67BP | |
| 6280 | IS3 family transposase | |||
| 69 | M | M.Ykr60539ORF13225P (75% identity) | M.Yen20ORF67AP | |
| 70 | R | Ykr60539ORF13225P (100% identity) | Yen20ORF67P | |
| 71 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 279 | SPOR domain-containing protein | |||
| 280 | M | M.Ykr60539DamP (100% identity) | GATC | M.Yen20DamP |
| 281 | ribulose-phosphate 3-epimerase | |||
| 404 | replication endonuclease | |||
| 405 | M | M.Ykr60539ORF11050P (99% identity) | M.Yen20ORF405P | |
| 406 | 114 aa hypothetical protein | |||
| 458 | 119 aa hypothetical protein | |||
| 459 | M | M.YenY3ORFEP (74% identity) | M.Yen20ORF459P | |
| 6480 | 107 aa hypothetical protein | |||
| 472 | GntR family transcriptional regulator | |||
| 473 | M | M1.YenYE53ORF12271P (96% identity) | GATC | M.Yen20ORF473P |
| 474 | DNA cytosine methyltransferase | |||
| 473 | phage N-6-adenine-methyltransferase | |||
| 474 | M | M.YenNW116ORF1760P (95% identity) | M.Yen20ORF474P | |
| 475 | phage regulatory protein/antirepressor Ant | |||
| 477 | antitermination protein | |||
| 480 | M | M.Yen20ORF3908P (96% identity) | M.Yen20ORF480P | |
| 481 | peptidoglycan-binding protein LysM | |||
| 1183 | 155 aa hypothetical protein | |||
| 1184 | M | M.Ykr60539ORF6055P (100% identity) | M.Yen20ORF1184P | |
| 1185 | 110 aa hypothetical protein | |||
| 3104 | 473 aa hypothetical protein | |||
| 3105 | M | M.SmaLY1ORFAP (73% identity) | M.Yen20ORF3105P | |
| 3106 | antitermination protein | |||
| 8005 | 60 aa hypothetical protein | |||
| 3111 | M | M.Yal159ORF100P (99% identity) | M.Yen20ORF3111P | |
| 3112 | 166 aa hypothetical protein | |||
| 8080 | 60 aa hypothetical protein | |||
| 8085 | M | M.YenNW67ORF10925P (95% identity) | M.Yen20ORF8085P | |
| 8090 | 69 aa hypothetical protein | |||
| 3278 | 197 aa hypothetical protein | |||
| 3279 | M | M.Yen20ORF8085P (37% identity) | M1.Yen20ORF3279P | |
| 3280 | M | M.Yen20ORF8085P (55% identity) | M2.Yen20ORF3279P | |
| 3281 | 69 aa hypothetical protein | |||
| 3907 | Rrf2 family transcriptional regulator | |||
| 3908 | M | M.Yen20ORF480P (96% identity) | M.Yen20ORF3908P | |
| 3910 | 247 aa hypothetical protein | |||
| 3915 | RusA family crossover junction | |||
| 3916 | M | M.Ysi228ORF14325P (93% identity) | GATC | M.Yen20ORF3916P |
| 3917 | 143 aa hypothetical protein | |||
| 8405 | 85 aa hypothetical protein | |||
| 3942 | M | M.YenY3ORFEP (96% identity) | M.Yen20ORF3942P | |
| 3943 | polyphosphate kinase | |||
| 8500 | pseudogene | |||
| 4179 | R | CsaCS09ORF14845P (57% identity) | GGWCC | Yen20ORF4180P |
| 4180 | M | M.Csa96ORF8640P (73% identity) | GGWCC | M.Yen20ORF4180P |
| 4181 | 70 aa hypothetical protein | |||
| 9005 | IS3 family transposase | |||
| 5098 | M | M.PleMot11ORFAP (68% identity) | M.Yen20ORF5098P | |
| 5099 | 610 aa hypothetical protein | |||
| 5100 | C | C.YenY4ORFEP (72% identity) | C.Yen20ORF5098P | |
| 9010 | 68 aa hypothetical protein | |||
| plasmid plasmid1_80K | ||||
| 6105 | 73 aa hypothetical protein | |||
| 9330 | M | M.Yen20ORFAP (99% identity) | M.Yen20ORF9330P | |
| 6109 | chromosome partitioning protein ParB | |||
| 6105 | Uncharacterized protein YubE | |||
| ??? | M | M.Yen20ORF9330P (99% identity) | M.Yen20ORFAP | |
| 6107 | 49 aa hypothetical protein | |||