Escherichia coli ST540 |
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Putative Escherichia coli ST540 RM systems
Ref: Xavier,B.B. et al. Genome Announc 2 (2), e00239-14 (2014)
REBASE ref # 17449
Complete sequence: 4,758,629 bp
GenBank #: CP007265
REBASE acronym: Eco540
Org_num: 12980
All begin BU34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9520 | antitoxin | |||
| 9525 | M | M.Eco540ANI (100% identity) | GAANNNNNNRTCG | M.Eco540I |
| 9530 | S | S.Eco751ORF26970P (100% identity) | GAANNNNNNRTCG | S.Eco540I |
| 9540 | DEAD/DEAH box helicase | |||
| 15840 | transposase | |||
| 15845 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | Eco540IIP |
| 15850 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.Eco540II |
| 15855 | M | M.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | M.Eco540II |
| 15860 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3175 | 281 aa hypothetical protein | |||
| 3180 | M | M.Ecoww7ORF22075P (100% identity) | GATC | M.Eco540ORF3180P |
| 3185 | 146 aa hypothetical protein | |||
| 6590 | holin | |||
| 6595 | M | M.Eco540AORF23015P (100% identity) | M.Eco540ORF6595P | |
| 6605 | 67 aa hypothetical protein | |||
| 9750 | 308 aa hypothetical protein | |||
| 9765 | M | M.UbapRSB107ORFAP (100% identity) | M.Eco540ORF9765P | |
| 9770 | 73 aa hypothetical protein | |||
| 11165 | cell division protein DamX | |||
| 11175 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco540DamP |
| 11180 | ribulose-phosphate 3-epimerase | |||
| 11890 | 59 aa hypothetical protein | |||
| 11895 | M | M.EcoC0320ORF2480P (100% identity) | ATGCAT | M.Eco540ORF11895P |
| 11900 | Fis family transcriptional regulator | |||
| 21175 | exonuclease | |||
| 21180 | M | M.Eco540AORF8880P (100% identity) | GATC | M.Eco540ORF21180P |
| 21185 | pseudogene | |||
| 23205 | DNA cytosine methylase | |||
| 23210 | V | V.EcosEC7DcmP (100% identity) | V.Eco540DcmP | |
| 23215 | multidrug DMT transporter | |||