Helicobacter pylori Sahul64 |
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Putative Helicobacter pylori Sahul64 RM systems
Ref: Lu,W. et al. J. Bacteriol. (2013) In press
REBASE ref # 17108
GenBank #: ALWV00000000
REBASE acronym: HpyS64
Org_num: 12259
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | hypothetical protein | S.HpyS64ORFJ1P | |
| ??? | S | S.HpyS64ORFJ1P (96% identity) | S.HpyS64ORFG1P | |
| ??? | modification methylase | |||
| ??? | M | type I restriction-modification system, M subunit | M.HpyS64ORFCP | |
| ??? | S | S.HpyC026XIII (94% identity) | S.HpyS64ORFCP | |
| ??? | R | HpyIS9XIIP (95% identity) | HpyS64ORFCP | |
| ??? | S | S.HpyT023III (84% identity) | S.HpyS64ORFPP | |
| ??? | M | M.HpySP503ORF7300P (91% identity) | M.HpyS64ORFPP | |
| ??? | R | HpyBGR7ORF7155P (93% identity) | HpyS64ORFPP | |
| ??? | metal-dependent hydrolase | |||
| ??? | S | S.HpyN6ORFAP (98% identity) | S.HpyS64ORFJP | |
| ??? | M | M.HpyIS8ORF2410P (97% identity) | M.HpyS64ORFJP | |
| ??? | R | hypothetical protein | HpyS64ORFJP | |
| ??? | R | type I restriction enzyme R protein HsdR | HpyS64ORFIP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpyKH23ORFWP (85% identity) | HpyS64ORFA1P | |
| ??? | R | HpySW05VP (86% identity) | GAATTC | HpyS64ORFH1P |
| ??? | R | 143 aa hypothetical protein | CCGG | HpyS64ORFLP |
| ??? | M | M.HpyDO1III (100% identity) | CCGG | M.HpyS64ORFLP |
| ??? | M | M.HpySP307VIII (97% identity) | GAATTC | M.HpyS64ORFI1P |
| ??? | M | M.HpySW27ORF5010P (99% identity) | TCNNGA | M.HpyS64ORFVP |
| ??? | R | HpyKH2ORFCP (100% identity) | TCNNGA | HpyS64ORFVP |
| ??? | M | M1.HpySP11ORF850P (97% identity) | M.HpyS64ORFNP | |
| ??? | ATPase AAA | |||
| ??? | R | R2.HpyIS1ORF860P (96% identity) | HpyS64ORFNP | |
| ??? | M | M.HpyLI21III (97% identity) | ATTAAT | M.HpyS64ORFB1P |
| ??? | non-functional type II restriction endonuclease | |||
| ??? | non-functional type II restriction endonuclease | |||
| ??? | M | M.HpyNCI55XI (99% identity) | ACNGT | M.HpyS64ORFC1P |
| ??? | R | HpyI019VIP (100% identity) | ACNGT | HpyS64ORFC1P |
| ??? | DNA methyltransferase | |||
| ??? | RM | HpyMT5124ORF6880P (93% identity) | HpyS64ORFQP | |
| ??? | DEAD/DEAH box helicase | |||
| ??? | M | M.HpyC102XVII (94% identity) | GCGC | M.HpyS64ORFF1P |
| ??? | 207 aa hypothetical protein | |||
| ??? | M | M.HpySW15ORF2305P (98% identity) | ACGT | M.HpyS64ORFD1P |
| ??? | R | HpyPO108ORF4480P (98% identity) | ACGT | HpyS64ORFD1P |
| ??? | R | HpyKH19ORFFP (96% identity) | GTAC | HpyS64ORFWP |
| ??? | M | M.Hpy201097ORF6700P (98% identity) | GTAC | M.HpyS64ORFWP |
| ??? | R | HpyL019ORF4145P (98% identity) | GGCC | HpyS64ORFBP |
| ??? | M | M.HpyU407ORF2255P (100% identity) | GGCC | M.HpyS64ORFBP |
| ??? | type I restriction-modification system, M subunit | |||
| ??? | S | S.HpyH009ORF7300P (45% identity) | S.HpyS64ORFTP | |
| ??? | RM | Hpy274ORF1659P (91% identity) | HpyS64ORFTP | |
| ??? | M | M.HpySW27XIII (98% identity) | TCGA | M.HpyS64ORFXP |
| ??? | M | M.HpyME09VIII (98% identity) | TCNGA | M.HpyS64ORFHP |
| ??? | R | HpyNCI14VIIIP (98% identity) | TCNGA | HpyS64ORFHP |
| ??? | RM | HpySW32ORF3645P (88% identity) | HpyS64ORFMP | |
| ??? | R | HpySW30VIIIP (82% identity) | CCATC | HpyS64ORFSP |
| ??? | M | M.HpySP105XI (98% identity) | TGCA | M.HpyS64ORFOP |
| ??? | R | hypothetical protein | TGCA | HpyS64ORFOP |
| ??? | M | M.HpyNCI57I (94% identity) | CATG | M.HpyS64ORFGP |
| ??? | M | M.HpyKH16ORFPP (92% identity) | GCSGC | M.HpyS64ORFAP |
| ??? | R | HpyP008ORF2660P (100% identity) | GCSGC | HpyS64ORFAP |
| ??? | M | M.HpySW18ORF1750P (99% identity) | GCNGC | M.HpyS64ORFKP |
| ??? | M | M1.HpySW28V (98% identity) | CCTC | M1.HpyS64ORFEP |
| ??? | M | M2.HpyLI06VIIP (98% identity) | CCTC | M2.HpyS64ORFEP |
| ??? | R | HpyKH9ORFLP (94% identity) | CCTC | HpyS64ORFEP |
| ??? | M | M.Hpyfe112ORF2720P (91% identity) | GTNNAC | M.HpyS64ORFFP |
| ??? | R | HpyNP09XIIIP (97% identity) | GTNNAC | HpyS64ORFFP |
| ??? | M | M.HpyL028II (97% identity) | GATC | M.HpyS64ORFDP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyIS8ORF3920P (95% identity) | GCAG | M.HpyS64ORFUP |
| ??? | R | Hpy49503ORF10460P (95% identity) | GCAG | HpyS64ORFUP |
| ??? | M | M.HpyID5ORF200P (90% identity) | M.HpyS64ORFZP | |
| ??? | R | HpyU101ORF6480P (91% identity) | HpyS64ORFZP | |
| ??? | 1177 aa hypothetical protein | |||
| ??? | R | HpyL001ORF7490P (95% identity) | HpyS64ORFRP | |
| ??? | M | M.HpyP006ORF7010P (97% identity) | M.HpyS64ORFRP | |
| ??? | M | M.HpyG020ORF6545P (95% identity) | M.HpyS64ORFYP | |
| ??? | R | HpyB130AORF1095P (90% identity) | HpyS64ORFYP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DNA-cytosine methyltransferase | |||
| ??? | R | R1.HpySW27ORF870P (96% identity) | HpyS64McrB2P | |
| ??? | 404 aa hypothetical protein | |||