Helicobacter pylori CG-IMSS-2012 |
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Putative Helicobacter pylori CG-IMSS-2012 RM systems
Ref: Mendez-Tenorio,A. et al. unpublished
REBASE ref # 17267
Contig set: 1,599,050 bp
GenBank #: AWUL00000000 (NZ_AWUL00000000)
REBASE acronym: Hpy2012
Org_num: 12298
All begin H500_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7860 | S | 162 aa hypothetical protein | S.Hpy2012ORF7865P | |
| ??? | M | M.HpySP314ORF7540P (93% identity) | M.Hpy2012ORF7865P | |
| ??? | hypothetical protein | |||
| ??? | hypothetical protein | |||
| ??? | R | HpyU406IVP (93% identity) | Hpy2012ORF8275P | |
| 7875 | pseudogene | |||
| 4470 | 631 aa hypothetical protein | |||
| ??? | R | HpyH028ORF5115P (90% identity) | Hpy2012ORF4485P | |
| 4485 | M | M.HpySP209ORF1765P (94% identity) | M.Hpy2012ORF4485P | |
| ??? | S | S.HpyU101ORF2135P (83% identity) | S.Hpy2012ORF4485P | |
| 4495 | polyphosphate kinase | |||
| 7300 | 30 aa hypothetical protein | |||
| 7305 | S | S.Hpy33CORF7025P (28% identity) | S.Hpy2012ORF7305P | |
| 7310 | formyltetrahydrofolate deformylase | |||
| 2300 | DNA methyltransferase | |||
| 2305 | M | M.HpySP107ORF2375P (92% identity) | M.Hpy2012ORF2305P | |
| 2310 | S | S.Hpy75ORFDP (94% identity) | S.Hpy2012ORF2305P | |
| 2315 | R | HpyME04ORF4180P (98% identity) | Hpy2012ORF2305P | |
| 2320 | hydroxyethylthiazole kinase | |||
| 2625 | cadmium transporter | |||
| 2630 | S | S.HpyDU8AORFOP (98% identity) | S.Hpy2012ORF2630P | |
| 2635 | 32 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1970 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyAL10VII (97% identity) | GTNNAC | M.Hpy2012ORF1975P |
| ??? | R | HpySP709IXP (98% identity) | GTNNAC | Hpy2012ORF1975P |
| 1980 | flagellar hook protein FlgE | |||
| 4290 | catalase | |||
| 4295 | M | M.HpyU105ORF2250P (45% identity) | ACGT | M.Hpy2012ORF4295P |
| 4300 | type II restriction endonuclease | |||
| 4295 | DNA methyltransferase | |||
| ??? | R | HpyNCI18IIIP (100% identity) | ACNGT | Hpy2012ORF4310P |
| 4310 | M | M.HpyNCI18III (100% identity) | ACNGT | M.Hpy2012ORF4310P |
| 4315 | integrase | |||
| 6995 | peptidase S41 | |||
| 7000 | R | Hpy5086ORF3475P (98% identity) | GANTC | Hpy2012ORF7005P |
| 7005 | M | M.HpyME03ORF6775P (99% identity) | GANTC | M.Hpy2012ORF7005P |
| 7010 | DNA methyltransferase | |||
| 4385 | glycosyltransferase 9 family protein | |||
| ??? | M | M.HpyC80IV (97% identity) | ATTAAT | M.Hpy2012ORF4390P |
| 7010 | DNA methyltransferase | |||
| 7015 | RM | HpyC018ORF6555P (85% identity) | Hpy2012ORF7015P | |
| 7020 | nicotinate-nucleotide pyrophosphorylase | |||
| 5375 | molecular chaperone ClpB | |||
| 5380 | M | M.HpyNCI23IX (100% identity) | CCGG | M.Hpy2012ORF5380P |
| 5385 | R | HpyU412IIP (97% identity) | CCGG | Hpy2012ORF5380P |
| 5390 | 204 aa hypothetical protein | |||
| 7445 | DNA polymerase I | |||
| ??? | S | S.HpyI015ORF7375P (92% identity) | S.Hpy2012ORF7455P | |
| 7455 | RM | HpyB45ORFDP (96% identity) | Hpy2012ORF7455P | |
| 7460 | amidophosphoribosyltransferase | |||
| 1225 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyME10IVP (99% identity) | TCNNGA | Hpy2012ORF1235P |
| 1235 | M | M.HpyI022II (99% identity) | TCNNGA | M.Hpy2012ORF1235P |
| 1240 | biotin carboxylase | |||
| 5390 | 204 aa hypothetical protein | |||
| 5395 | M | M.HpyNCI55IV (94% identity) | TCGA | M.Hpy2012ORF5395P |
| 5400 | exodeoxyribonuclease VII large subunit | |||
| 1015 | flgM protein | |||
| 1060 | M | M.HpyME32XII (97% identity) | GCGC | M.Hpy2012ORF1060P |
| 1020 | 144 aa hypothetical protein | |||
| 7945 | 67 aa hypothetical protein | |||
| 7950 | M | M.HpyME32XI (100% identity) | TGCA | M.Hpy2012ORF7950P |
| 7955 | R | HpyME32XIP (100% identity) | TGCA | Hpy2012ORF7950P |
| 7960 | cytochrome C | |||
| 450 | HrgA protein | |||
| 455 | M | M.HpyBR13VI (96% identity) | GATC | M.Hpy2012ORF455P |
| 460 | alpha-1,2-fucosyltransferase | |||
| 4175 | metalloendopeptidase like protein | |||
| 4180 | R | HpyJO6XIP (96% identity) | GTAC | Hpy2012ORF4185P |
| 4185 | M | M.HpyMT5124VIII (99% identity) | GTAC | M.Hpy2012ORF4185P |
| 4190 | DNA gyrase subunit B | |||
| 6240 | hydrolase | |||
| 6245 | M | M.HpyBT302ORFRP (95% identity) | CATG | M.Hpy2012ORF6245P |
| 6250 | 94 aa hypothetical protein | |||
| 2290 | membrane protein | |||
| 2295 | R | HpySP312ORF4340P (100% identity) | GGCC | Hpy2012ORF2300P |
| 2300 | M | M.HpySP312ORF4340P (100% identity) | GGCC | M.Hpy2012ORF2300P |
| 2305 | type I restriction endonuclease | |||
| 225 | agmatine deiminase | |||
| 230 | M | M1.HpySP304VII (97% identity) | CCTC | M1.Hpy2012ORF230P |
| 235 | M | M2.HpyCOL204ORF250P (99% identity) | CCTC | M2.Hpy2012ORF230P |
| 240 | R | HpySP322VIP (96% identity) | CCTC | Hpy2012ORF230P |
| 245 | sodium:proline symporter | |||
| 7585 | permease | |||
| 7590 | M | M1.HpyI011VII (99% identity) | CCATC | M1.Hpy2012ORF7590P |
| 7845 | M | M1.HpyME32VI (100% identity) | GATGG | M2.Hpy2012ORF7590P |
| 7595 | R | HpyME32VIP (97% identity) | CCATC | Hpy2012ORF7590P |
| 7600 | membrane protein | |||
| 5840 | N-acetylneuraminate synthase | |||
| ??? | R | 353 aa hypothetical protein jhp0165 | Hpy2012ORFAP | |
| 5845 | type IV restriction endonuclease | |||
| 3235 | membrane protein | |||
| ??? | RM | Hpy5006ORF7480P (62% identity) | Hpy2012ORF3240P | |
| 3250 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 7675 | CAAX protease | |||
| ??? | RM | HpyCA4ORF6775P (79% identity) | Hpy2012ORF7680P | |
| 7695 | 749 aa hypothetical protein | |||
| 2475 | 33 aa hypothetical protein | |||
| 2480 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy2012ORF2480P |
| 2485 | R | HpySP507IVP (92% identity) | CGWCG | Hpy2012ORF2480P |
| 2490 | osmoprotection binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7075 | methylase | |||
| 7080 | M | M.HpyGRE039ORF385P (84% identity) | M.Hpy2012ORF7080P | |
| 7085 | R | HpyV002XVIIP (91% identity) | Hpy2012ORF7080P | |
| 7090 | rod shape-determining protein MreC | |||
| 7140 | endonuclease | |||
| 7145 | M | M.HpyHORF1328P (95% identity) | M.Hpy2012ORF7145P | |
| 7150 | R | HpySP01ORF6690P (92% identity) | Hpy2012ORF7145P | |
| 7155 | biotin synthase | |||
| ??? | hypothetical protein | |||
| ??? | R | HpySP505ORF7040P (94% identity) | Hpy2012ORF7700P | |
| 7700 | M | M.HpySWT08ORF7345P (97% identity) | M.Hpy2012ORF7700P | |
| 7705 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4130 | 50S ribosomal protein L9 | |||
| 4135 | R | HpyP108GmrSDP (85% identity) | Hpy2012GmrSDP | |
| 4140 | glutamine synthetase | |||
| ??? | 353 aa hypothetical protein jhp0165 | |||
| 5845 | R | R1.HpyME08ORF1235P (48% identity) | Hpy2012McrBP | |