Rhodobacter capsulatus DE442 |
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Putative Rhodobacter capsulatus DE442 RM systems
Ref: Ding,H. et al. Genome Announc 2 (1), e00050-14 (2014)
REBASE ref # 17142
Contig set: 3,760,501 bp
GenBank #: AYPR00000000 (NZ_AYPR00000000)
REBASE acronym: RcaDE442
Org_num: 12240
All begin U714_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5955 | integrase | |||
| 5960 | R | RcaY262ORF5965P (100% identity) | RcaDE442ORF5965P | |
| 5965 | M | M.RcaY262ORF5965P (100% identity) | M.RcaDE442ORF5965P | |
| 5970 | 308 aa hypothetical protein | |||
| ??? | S | S.RcaY262ORF5965P (100% identity) | S.RcaDE442ORF5965P | |
| 5990 | ATPase AAA | |||
| 7825 | 547 aa hypothetical protein | |||
| 7830 | R | RcaY262ORF8005P (100% identity) | RcaDE442ORF7835P | |
| 7835 | M | M.RcaY262ORF8005P (100% identity) | M.RcaDE442ORF7835P | |
| 7840 | S | S.RcaY262ORF8005P (100% identity) | S.RcaDE442ORF7835P | |
| 7845 | 312 aa hypothetical protein | |||
| 10960 | 219 aa hypothetical protein | |||
| 10965 | R | RcaY262ORF11125P (100% identity) | RcaDE442ORF10970P | |
| ??? | S | S.RcaY262ORF11125P (100% identity) | S.RcaDE442ORF10970P | |
| 10970 | M | M.RcaY262ORF11125P (100% identity) | M.RcaDE442ORF10970P | |
| 10975 | DNA invertase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1845 | MarR family transcriptional regulator | |||
| 1850 | M | M.RcaYW1ORF1750P (100% identity) | GANTC | M.RcaDE442ORF1850P |
| 1855 | ribonuclease HII | |||
| 5915 | 234 aa hypothetical protein | |||
| 5920 | M | M1.RcaY262ORF5920P (100% identity) | M1.RcaDE442ORF5920P | |
| 5925 | M | M2.RcaY262ORF5920P (100% identity) | M2.RcaDE442ORF5920P | |
| 5930 | 173 aa hypothetical protein | |||
| 14980 | 499 aa hypothetical protein | |||
| 14985 | M | M.RcaY262ORF15125P (100% identity) | AGCT | M.RcaDE442ORF14985P |
| 14990 | 59 aa hypothetical protein | |||
| 15100 | 396 aa hypothetical protein | |||
| 15105 | M | M1.RcaY262ORF15245P (100% identity) | M.RcaDE442ORF15105P | |
| 15110 | DNA methyltransferase | |||
| 15105 | DNA methylase | |||
| 15110 | M | M2.RcaY262ORF15245P (100% identity) | M.RcaDE442ORF15110P | |
| 15120 | sulfate transporter subunit | |||
| 4390 | 64 aa hypothetical protein | |||
| ??? | M | M.RphNL1ORFAP (100% identity) | M.RcaDE442ORF4395P | |
| 4400 | 77 aa hypothetical protein | |||
| 11345 | 115 aa hypothetical protein | |||
| ??? | M | DNA methyltransferase | M.RcaDE442ORF11350P | |
| 11355 | 91 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7540 | 361 aa hypothetical protein | |||
| 7545 | M | M.RcaY262ORF7715P (100% identity) | M.RcaDE442ORF7545P | |
| 7550 | R | RcaY262ORF7715P (100% identity) | RcaDE442ORF7545P | |
| 7555 | recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7645 | DeoR family transcriptional regulator | |||
| ??? | R | RcaY262McrBP (100% identity) | RcaDE442McrBP | |
| 7655 | R | RcaY262McrCP (100% identity) | RcaDE442McrCP | |
| 7660 | 240 aa hypothetical protein | |||
| 17045 | heme ABC transporter ATP-binding protein | |||
| ??? | R | RcaY262McrB2P (100% identity) | RcaDE442McrB2P | |
| 17055 | elongation factor 4 | |||