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Putative Rhodobacter capsulatus R121 RM systems
Ref: Ding,H. et al. Genome Announc 2 (1), e00050-14 (2014)
REBASE ref # 17142
Contig set: 3,766,673 bp
GenBank #: AYQC00000000 (NZ_AYQC00000000)
REBASE acronym: RcaR121
Org_num: 12245
All begin U717_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
5960 | integrase | |||
5965 | R | RcaY262ORF5965P (100% identity) | RcaR121ORF5970P | |
5970 | M | M.RcaY262ORF5965P (100% identity) | M.RcaR121ORF5970P | |
5975 | 308 aa hypothetical protein | |||
??? | S | S.RcaY262ORF5965P (100% identity) | S.RcaR121ORF5970P | |
5995 | ATPase AAA | |||
11115 | 219 aa hypothetical protein | |||
11120 | R | RcaY262ORF11125P (100% identity) | RcaR121ORF11125P | |
??? | S | S.RcaY262ORF11125P (100% identity) | S.RcaR121ORF11125P | |
11125 | M | M.RcaY262ORF11125P (100% identity) | M.RcaR121ORF11125P | |
11130 | DNA invertase | |||
7995 | 547 aa hypothetical protein | |||
8000 | R | RcaY262ORF8005P (100% identity) | RcaR121ORF8005P | |
8005 | M | M.RcaY262ORF8005P (100% identity) | M.RcaR121ORF8005P | |
8010 | S | S.RcaY262ORF8005P (100% identity) | S.RcaR121ORF8005P | |
8015 | 312 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1850 | MarR family transcriptional regulator | |||
1855 | M | M.RcaYW1ORF1750P (100% identity) | GANTC | M.RcaR121ORF1855P |
1860 | ribonuclease HII | |||
5920 | 234 aa hypothetical protein | |||
5925 | M | M1.RcaY262ORF5920P (100% identity) | M1.RcaR121ORF5925P | |
5930 | M | M2.RcaY262ORF5920P (100% identity) | M2.RcaR121ORF5925P | |
5935 | 173 aa hypothetical protein | |||
4395 | 64 aa hypothetical protein | |||
??? | M | M.RphNL1ORFAP (100% identity) | M.RcaR121ORF4400P | |
4405 | 77 aa hypothetical protein | |||
15135 | 499 aa hypothetical protein | |||
15140 | M | M.RcaY262ORF15125P (100% identity) | AGCT | M.RcaR121ORF15140P |
15145 | 59 aa hypothetical protein | |||
15255 | 396 aa hypothetical protein | |||
15260 | M | M1.RcaY262ORF15245P (100% identity) | M1.RcaR121ORF15265P | |
15265 | M | M2.RcaY262ORF15245P (100% identity) | M2.RcaR121ORF15265P | |
15275 | sulfate transporter subunit | |||
11500 | 115 aa hypothetical protein | |||
??? | M | DNA methyltransferase | M.RcaR121ORF11505P | |
11510 | 91 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
7715 | 361 aa hypothetical protein | |||
7720 | M | M.RcaY262ORF7715P (100% identity) | M.RcaR121ORF7720P | |
7725 | R | RcaY262ORF7715P (100% identity) | RcaR121ORF7720P | |
7730 | recombinase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
17010 | heme ABC transporter ATP-binding protein | |||
??? | R | RcaY262McrB2P (100% identity) | RcaR121McrB2P | |
17020 | elongation factor 4 | |||
7820 | DeoR family transcriptional regulator | |||
??? | R | RcaY262McrBP (100% identity) | RcaR121McrBP | |
7830 | R | RcaY262McrCP (100% identity) | RcaR121McrCP | |
7835 | 240 aa hypothetical protein |