Vibrio parahaemolyticus UCM-V493 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Vibrio parahaemolyticus UCM-V493 RM systems
Ref: Kalburge,S.S. and Boyd,F. unpublished
REBASE ref # 17500
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,445,790 bp | CP007004 |
| plasmid pVPUCMV: | 88,530 bp | CP007006 |
REBASE acronym: VpaV493
Org_num: 12212
All begin VPUCM_, VPUCM_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 721 | 320 aa hypothetical protein | |||
| 722 | M | M.Ahy9804ORF16440P (89% identity) | M.VpaV493ORF722P | |
| 723 | S | S.MspF38ORF17320P (87% identity) | S.VpaV493ORF722P | |
| 724 | R | Vfl0110ORFBP (98% identity) | VpaV493ORF722P | |
| 725 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1150 | Mobile element protein | |||
| 1151 | M | M.VpaBM17AORF2980P (27% identity) | GATC | M.VpaV493ORF1151P |
| 1152 | endonuclease | |||
| 1160 | phage protein | |||
| 1161 | M | M.Val64140ORF3435P (95% identity) | M.VpaV493ORF1161P | |
| 1162 | 431 aa hypothetical protein | |||
| 1163 | 220 aa hypothetical protein | |||
| 1164 | S | S.Ssp8227ORF2875P (95% identity) | S.VpaV493ORF1161P | |
| 1165 | protein kinase, putative | |||
| 2844 | Ribulose-phosphate 3-epimerase | |||
| 2845 | M | M.VpaTDH2DamP (100% identity) | GATC | M.VpaV493DamP |
| 2846 | DamX, an inner membrane protein involved in bile | |||
| plasmid pVPUCMV | ||||
| 115 | 245 aa hypothetical protein | |||
| 1 | M | M.Vpa53ORF4895P (100% identity) | CCNGG | M.VpaV493ORF1P |
| 2 | 165 aa Hypothetical protein, specific for Vibrio | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 641 | Mobile element protein | |||
| 642 | R | VpaVP157McrBP (77% identity) | VpaV493McrB2P | |
| 643 | R | Vpa072McrCP (99% identity) | VpaV493McrC2P | |
| 644 | Mobile element protein | |||
| 724 | Type I restriction-modification system, | |||
| 725 | R | Vfl0110MrrP (100% identity) | VpaV493MrrP | |
| 726 | 59 aa hypothetical protein | |||
| 1151 | prophage LambdaSo, DNA modification | |||
| 1152 | R | PkiA14McrBP (47% identity) | VpaV493McrBP | |
| 1153 | R | Vdi6510MMcrCP (44% identity) | VpaV493McrCP | |
| 1154 | 110 aa hypothetical protein | |||