Xylella fastidiosa 6c |
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Putative Xylella fastidiosa 6c RM systems
Ref: Alencar,V.C. et al. Genome Announc 2 (1) (2014)
REBASE ref # 17018
Contig set: 2,606,002 bp
GenBank #: AXBS00000000 (NZ_AXBS00000000)
REBASE acronym: XfaXf6c
Org_num: 12191
All begin B375_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1285 | pseudogene | |||
| 1290 | R | XfaPr8ORF1275P (100% identity) | XfaXf6cORF1300P | |
| 1295 | S | S.XfaORF297P (100% identity) | S.XfaXf6cORF1300P | |
| 1300 | M | M.XfaPr8ORF1275P (100% identity) | M.XfaXf6cORF1300P | |
| 1310 | 68 aa hypothetical protein | |||
| 12065 | pseudogene | |||
| 12070 | R | XfaPr8ORF11605P (99% identity) | XfaXf6cORF12080P | |
| 12075 | S | S.XfaPr8ORF11605P (100% identity) | S.XfaXf6cORF12080P | |
| 12080 | M | M.XfaPr8ORF11605P (100% identity) | M.XfaXf6cORF12080P | |
| 12085 | 241 aa hypothetical protein | |||
| 12085 | 241 aa hypothetical protein | |||
| 12090 | R | XfaPr8ORF11630P (100% identity) | XfaXf6cORF12105P | |
| 12095 | S | S.XfaPr8ORF11630P (100% identity) | S.XfaXf6cORF12105P | |
| 12100 | pseudogene | |||
| 12105 | M | M.XfaPr8ORF11630P (100% identity) | M.XfaXf6cORF12105P | |
| 12110 | threonine transporter RhtB | |||
| 12160 | 126 aa hypothetical protein | |||
| 12165 | R | XfaPr8ORF11705P (100% identity) | XfaXf6cORF12180P | |
| 12175 | S | S.XfaPr8ORF11705P (100% identity) | S.XfaXf6cORF12180P | |
| 12180 | M | M.XfaPr8ORF11705P (100% identity) | M.XfaXf6cORF12180P | |
| 12185 | 55 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10005 | peptidase | |||
| 10010 | M | M.XfaPr8ORF9680P (100% identity) | M.XfaXf6cORF10010P | |
| 10015 | 251 aa hypothetical protein | |||
| 1900 | 231 aa hypothetical protein | |||
| 1905 | M | M.XfaPr8ORF1840P (100% identity) | M.XfaXf6cORF1905P | |
| 1910 | type II restriction endonuclease NgoMIV | |||
| 1905 | restriction endonuclease subunit M | |||
| 1910 | R | XfaPr8ORF1850P (100% identity) | GCCGGC | XfaXf6cORF1910P |
| 1915 | M | M.XfaLM10ORF9845P (97% identity) | GCCGGC | M.XfaXf6cORF1910P |
| 1920 | XRE family transcriptional regulator | |||
| 10315 | DNA methyltransferase | |||
| 10320 | M | M.XfaXf32ORF10150P (100% identity) | M.XfaXf6cORF10320P | |
| 10325 | 83 aa hypothetical protein | |||
| 5905 | 47 aa hypothetical protein | |||
| 5915 | M | M.XfaXf32ORF6285P (100% identity) | GCATGC | M.XfaXf6cORF5915P |
| 5920 | 190 aa hypothetical protein | |||
| 6075 | group II intron reverse transcriptase/maturase | |||
| 6085 | M | M.XfaPr8ORF5700P (100% identity) | M.XfaXf6cORF6085P | |
| 6090 | 252 aa hypothetical protein | |||
| 2770 | 80 aa hypothetical protein | |||
| 2775 | R | XfaY3CORF8005P (100% identity) | CGTACG | XfaXf6cORF2780P |
| 2780 | M | M.XfaPr8ORF2645P (100% identity) | CGTACG | M.XfaXf6cORF2780P |
| 2790 | peptidylprolyl isomerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5100 | 3-oxoacyl-ACP synthase | |||
| 5105 | M | M.XfaPr8ORF4830P (100% identity) | M.XfaXf6cORF5105P | |
| 5110 | R | XfaPr8ORF4830P (100% identity) | XfaXf6cORF5105P | |
| 5115 | alpha/beta hydrolase | |||