Helicobacter pylori X47-2AL |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori X47-2AL RM systems
Ref: Veyrier,F.J. et al. Genome Announc 1 (6), e01095-13 (2013)
REBASE ref # 16874
GenBank #: AWNG00000000
REBASE acronym: Hpy2AL
Org_num: 11898
All begin N871_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4920 | S | S.HpyME03ORF7485P (46% identity) | S.Hpy2ALORF4920P | |
| 4925 | DNA polymerase I | |||
| 7220 | S | pseudogene | S.Hpy2ALORF7220P | |
| ??? | M | M.HpyP108VI (86% identity) | M.Hpy2ALORF5955P | |
| ??? | hypothetical protein | |||
| ??? | hypothetical protein | |||
| ??? | M | M.HpyIceORFLP (36% identity) | M.Hpy2ALORF5960P | |
| 5965 | membrane protein | |||
| 2005 | M | M.HpyIS7ORF7135P (96% identity) | M.Hpy2ALORF2005P | |
| 2010 | R | HpyJ182ORF605P (94% identity) | Hpy2ALORF2005P | |
| 2015 | metal-dependent hydrolase | |||
| 5155 | 631 aa hypothetical protein | |||
| 5160 | R | HpySW10ORF2275P (94% identity) | Hpy2ALORF5165P | |
| 5165 | M | M.HpyI027ORF2155P (97% identity) | M.Hpy2ALORF5165P | |
| 5170 | S | S.HpyK028ORF2235P (97% identity) | S.Hpy2ALORF5165P | |
| 5175 | 36 aa hypothetical protein | |||
| 1305 | membrane protein | |||
| 1310 | S | S.Hpys8ORF6840P (95% identity) | S.Hpy2ALORF1310P | |
| 1315 | cadmium transporter | |||
| 1605 | hydroxyethylthiazole kinase | |||
| 1610 | R | HpyIS7ORF3475P (96% identity) | Hpy2ALORF1610P | |
| 1615 | S | S.HpySW16ORF3445P (96% identity) | S.Hpy2ALORF1610P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1620 | 143 aa hypothetical protein | |||
| 1625 | R | HpyKA1IVP (98% identity) | CCGG | Hpy2ALORF1630P |
| 1630 | M | M.HpyU422V (98% identity) | CCGG | M.Hpy2ALORF1630P |
| 1635 | molecular chaperone ClpB | |||
| 5660 | M | M.HpySW05IV (98% identity) | ATTAAT | M.Hpy2ALORF5660P |
| 5665 | glycosyltransferase 9 family protein | |||
| 6455 | flagellar hook protein FlgE | |||
| 6460 | R | HpyNP09XIIIP (94% identity) | GTNNAC | Hpy2ALORF6465P |
| 6465 | M | M.HpyT022XII (96% identity) | GTNNAC | M.Hpy2ALORF6465P |
| 6470 | ATP-dependent DNA helicase | |||
| 5670 | GTP-binding protein | |||
| 5675 | M | M.HpyKH19ORFC1P (98% identity) | ACNGT | M.Hpy2ALORF5675P |
| 5680 | R | Hpyfe64ORF3335P (96% identity) | ACNGT | Hpy2ALORF5675P |
| 5685 | DNA methyltransferase | |||
| 5680 | type II restriction endonuclease | |||
| 5685 | M | M.HpyKG3ORF4170P (98% identity) | ACGT | M.Hpy2ALORF5685P |
| 5690 | R | HpyIS2ORF2245P (98% identity) | ACGT | Hpy2ALORF5685P |
| 5695 | pseudogene | |||
| 6535 | malonyl CoA-ACP transacylase | |||
| 6545 | R | HpyL005XP (95% identity) | GATC | Hpy2ALORF6550P |
| 6550 | M | M.Hpy381FORFHP (98% identity) | GATC | M.Hpy2ALORF6550P |
| 6555 | pseudogene | |||
| 3865 | purine nucleoside phosphorylase | |||
| 3870 | R | HpyU408XP (100% identity) | TCNGA | Hpy2ALORF3875P |
| 3875 | M | M.HpyL026XI (98% identity) | TCNGA | M.Hpy2ALORF3875P |
| 3880 | 91 aa hypothetical protein | |||
| 4220 | 73 aa hypothetical protein | |||
| 4225 | R | HpyAR3VIP (96% identity) | GANTC | Hpy2ALORF4220P |
| 4230 | M | M.Hpy328ORF1020P (98% identity) | GANTC | M.Hpy2ALORF4220P |
| 4235 | 30 aa hypothetical protein | |||
| 7815 | Laminin subunit alpha-2 precursor | |||
| 7820 | R | HpyU404IXP (88% identity) | TCNNGA | Hpy2ALORF7825P |
| 7825 | M | M.HpyOK30ORFZP (99% identity) | TCNNGA | M.Hpy2ALORF7825P |
| 7830 | methyltransferase | |||
| 3070 | 414 aa hypothetical protein | |||
| 3075 | RM | HpyNP12ORF7315P (89% identity) | Hpy2ALORF3075P | |
| 3085 | 28 aa hypothetical protein | |||
| 6695 | flgM protein | |||
| 6700 | M | M.HpySP104XV (97% identity) | GCGC | M.Hpy2ALORF6700P |
| 6705 | 144 aa hypothetical protein | |||
| 3435 | hydrolase | |||
| 3440 | M | M.HpyIS4I (99% identity) | CATG | M.Hpy2ALORF3440P |
| ??? | R | Hpy19AORFZP (90% identity) | CATG | Hpy2ALORF3440P |
| 3450 | serine acetyltransferase | |||
| 2095 | 67 aa hypothetical protein | |||
| 2100 | M | M.HpySW27VI (98% identity) | TGCA | M.Hpy2ALORF2100P |
| 2105 | R | HpyF006IIIP (98% identity) | TGCA | Hpy2ALORF2100P |
| 2110 | cytochrome C | |||
| 2510 | sodium:proline symporter | |||
| 2515 | M | M2.HpyIS3VP (97% identity) | CCTC | M2.Hpy2ALORF2515P |
| 2520 | M | M1.HpyB140ORF7385P (98% identity) | CCTC | M1.Hpy2ALORF2515P |
| 2525 | agmatine deiminase | |||
| 310 | pseudogene | |||
| ??? | RM | HpyG011ORF3370P (87% identity) | Hpy2ALORF315P | |
| 325 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 3325 | amidophosphoribosyltransferase | |||
| ??? | RM | HpyIS2ORF6885P (98% identity) | Hpy2ALORFAP | |
| 830 | membrane protein | |||
| 835 | R | HpyCA26IXP (96% identity) | GTAC | Hpy2ALORF840P |
| 840 | M | M.HpyLI30II (99% identity) | GTAC | M.Hpy2ALORF840P |
| 845 | DNA gyrase subunit B | |||
| 5605 | 156 aa hypothetical protein | |||
| 5610 | M | M.HpyGRE046ORF1850P (100% identity) | GCNGC | M.Hpy2ALORF5610P |
| 5615 | elongation factor 4 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3040 | ATP-dependent DNA helicase RecG | |||
| 3045 | M | M.HpyMM06ORF7050P (94% identity) | M.Hpy2ALORF3045P | |
| 3050 | R | HpyP005ORF7060P (96% identity) | Hpy2ALORF3045P | |
| 3055 | pseudogene | |||
| 4295 | chemotaxis protein CheY | |||
| 4300 | M | M.HpyG003ORF6725P (93% identity) | M.Hpy2ALORF4300P | |
| 4305 | R | HpyID11ORF6380P (86% identity) | Hpy2ALORF4300P | |
| 4310 | rod shape-determining protein MreC | |||
| 520 | 54 aa hypothetical protein | |||
| 525 | M | M.HpyAL03ORFCP (93% identity) | CTGCAG | M.Hpy2ALORF525P |
| 530 | R | HpyIS9ORF3270P (96% identity) | CTGCAG | Hpy2ALORF525P |
| 535 | 29 aa hypothetical protein | |||
| 4360 | endonuclease | |||
| 4365 | M | M.HpyIS4XV (93% identity) | M.Hpy2ALORF4365P | |
| ??? | R | HpyIS10ORF6370P (93% identity) | Hpy2ALORF4365P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 785 | 50S ribosomal protein L9 | |||
| 790 | R | HpyPO106GmrSDP (87% identity) | Hpy2ALGmrSDP | |
| 795 | glutamine synthetase | |||