Helicobacter pylori BM012S |
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Putative Helicobacter pylori BM012S RM systems
Ref: Linz,B. et al. PLoS ONE (2013) In press
REBASE ref # 16715
Complete sequence: 1,660,469 bp
GenBank #: CP006889
REBASE acronym: Hpy12S
Org_num: 11444
All begin U064_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1097 | Outer membrane protein HofF | |||
| 1098 | S | S.Hpy12BORF5785P (100% identity) | S.Hpy12SORF1098P | |
| 1099 | Lead, cadmium, zinc and mercury transporting | |||
| 1153 | Hydroxyethylthiazole kinase | |||
| ??? | R | Hpy12AORF1155P (100% identity) | Hpy12SORF1159P | |
| 1157 | OrfB in transposon IS607 | |||
| 1158 | OrfA in transposon IS607 | |||
| 1159 | M | M.Hpy12AORF1155P (100% identity) | M.Hpy12SORF1159P | |
| 1160 | Membrane-associated phospholipid phosphatase | |||
| 1211 | 646 aa hypothetical protein | |||
| 1212 | R | Hpy12AORF1212AP (100% identity) | Hpy12SORF1216AP | |
| 1213 | OrfB in transposon IS607 | |||
| 1214 | OrfA in transposon IS607 | |||
| 1215 | R | R2.Hpy12BORF6370P (100% identity) | Hpy12SORF1216BP | |
| 1216 | M | M.Hpy12BORF6370P (100% identity) | M.Hpy12SORF1216P | |
| 1217 | S | S.Hpy12AORF1212P (100% identity) | S.Hpy12SORF1216P | |
| 1219 | Polyphosphate kinase | |||
| 1555 | 43 aa hypothetical protein | |||
| 1556 | S | S1.Hpy12AORF1554P (100% identity) | S.Hpy12SORF1558P | |
| 1557 | 171 aa hypothetical protein | |||
| 1558 | M | M.Hpy12BORF8155P (100% identity) | M.Hpy12SORF1558P | |
| 1559 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49 | Agmatine deiminase | |||
| 50 | M | M1.Hpy12BORF280P (100% identity) | CCTC | M1.Hpy12SORF50P |
| 51 | M | M2.Hpy12BORF280P (100% identity) | CCTC | M2.Hpy12SORF50P |
| 52 | R | Hpy12AORF50P (100% identity) | CCTC | Hpy12SORF50P |
| 54 | 47 aa hypothetical protein | |||
| 56 | 258 aa hypothetical protein | |||
| ??? | R | Hpy12BORF320P (100% identity) | GANTC | Hpy12SORF59P |
| 59 | M | M.Hpy12AORF59P (100% identity) | GANTC | M.Hpy12SORF59P |
| 60 | adenine specific DNA methyltransferase | |||
| 59 | Modification methylase | |||
| ??? | RM | Type IIG R-M system | Hpy12SORF60P | |
| 63 | Decarboxylating quinolinate | |||
| 103 | lipopolysaccharide 1,2-glucosyltransferase | |||
| ??? | M | M.Hpy12BORF560P (100% identity) | GAATTC | M.Hpy12SORF104P |
| 105 | Adenine-specific methyltransferase | |||
| 104 | Modification methylase EcoRI | |||
| 105 | M | Adenine-specific methyltransferase | CCTC | M.Hpy12SORF105P |
| 106 | Agmatine deiminase | |||
| 106 | Agmatine deiminase | |||
| 107 | M | M.Hpy12BORF580P (100% identity) | M.Hpy12SORF107P | |
| 109 | 114 aa hypothetical protein | |||
| 136 | Serine acetyltransferase | |||
| ??? | R | Hpy12BORF730P (100% identity) | CATG | Hpy12SORF139P |
| 139 | M | M.Hpy12BORF730P (100% identity) | CATG | M.Hpy12SORF139P |
| 140 | Haloacid dehalogenase | |||
| 254 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | Hpy12BORFBP (100% identity) | GAATTC | Hpy12SORF255P |
| 259 | Carboxyl-terminal protease | |||
| 368 | Prephenate and/or arogenate dehydrogenase | |||
| ??? | M | M.Hpy12BORFAP (100% identity) | CCTC | M.Hpy12SORF369P |
| ??? | type II DNA modification enzyme | |||
| ??? | DNA methylase N-4/N-6 domain-containing protein | |||
| ??? | M | type II DNA modification enzyme | GTSAC | M.Hpy12SORF371P |
| 373 | OrfB in transposon IS607 | |||
| 434 | Malonyl CoA-acyl carrier protein transacylase | |||
| 436 | R | Hpy12BORF2325P (90% identity) | GATC | Hpy12SORF437P |
| 437 | M | M.Hpy12BORF2325P (100% identity) | GATC | M.Hpy12SORF437P |
| 438 | 300 aa hypothetical protein | |||
| 518 | ATPase AAA | |||
| 520 | R | Hpy12BORF2760P (100% identity) | Hpy12SORF520P | |
| 521 | Pseudaminic acid synthase | |||
| 602 | Exodeoxyribonuclease VII large subunit | |||
| 603 | R | Hpy12BORF3210P (100% identity) | CCGG | Hpy12SORF604P |
| 604 | M | M.Hpy12BORF3210P (100% identity) | CCGG | M.Hpy12SORF604P |
| 605 | ClpB protein, ATP-dependent protease binding | |||
| 651 | polysaccharide deacetylase | |||
| 652 | R | Hpy12BORF3460P (100% identity) | CTNAG | Hpy12SORF653P |
| 653 | M | M.Hpy12BORF3460P (100% identity) | CTNAG | M.Hpy12SORF653P |
| 654 | 120 aa hypothetical protein | |||
| 765 | ATP-dependent DNA helicase UvrD/PcrA/Rep | |||
| ??? | M | M.Hpy12BORF4060P (100% identity) | GTNNAC | M.Hpy12SORF766P |
| 768 | R | Hpy12AORF764P (100% identity) | GTNNAC | Hpy12SORF766P |
| 769 | Flagellar hook protein FlgE | |||
| 812 | DNA gyrase subunit B | |||
| 813 | M | M.Hpy12BORF4290P (100% identity) | GTAC | M.Hpy12SORF813P |
| ??? | R | Hpy12AORF810P (100% identity) | GTAC | Hpy12SORF813P |
| 816 | membrane protein | |||
| 974 | oxidoreductase ferredoxin-like protein | |||
| ??? | RM | restriction endonuclease Eco57I | Hpy12SORF975P | |
| ??? | 438 aa hypothetical protein C695_03465 | |||
| ??? | restriction endonuclease Eco57I | |||
| ??? | RM | 438 aa hypothetical protein C695_03465 | Hpy12SORF978P | |
| 980 | Outer membrane protein HorF | |||
| 1192 | Catalase | |||
| 1193 | M | M.Hpy12AORF1189P (100% identity) | ACGT | M.Hpy12SORF1193P |
| 1194 | 207 aa hypothetical protein | |||
| 1193 | DNA-cytosine methyltransferase | |||
| 1194 | R | Hpy12BORF6260P (100% identity) | ACNGT | Hpy12SORF1195P |
| 1195 | M | M.Hpy12BORF6260P (100% identity) | ACNGT | M.Hpy12SORF1195P |
| 1196 | GTP-binding protein TypA/BipA | |||
| 1197 | adenine specific DNA methyltransferase | |||
| 1198 | M | M.Hpy12AORF1194P (100% identity) | ATTAAT | M.Hpy12SORF1198P |
| 1199 | Outer membrane protein HopJ | |||
| 1403 | 177 aa hypothetical protein | |||
| 1404 | M | M.Hpy12BORF7335P (100% identity) | TCNNGA | M.Hpy12SORF1404P |
| ??? | R | Hpy12BORF7335P (100% identity) | TCNNGA | Hpy12SORF1404P |
| 1407 | 197 aa hypothetical protein | |||
| 1441 | 144 aa hypothetical protein | |||
| 1442 | M | M.Hpy12BORF7540P (100% identity) | GCGC | M.Hpy12SORF1442P |
| 1443 | FlgM protein | |||
| 1496 | DNA polymerase I | |||
| 1497 | S | S.Hpy12BORF7835P (100% identity) | S.Hpy12SORF1498P | |
| 1498 | RM | Hpy12BORF7835P (100% identity) | Hpy12SORF1498P | |
| 1499 | 185 aa hypothetical protein | |||
| 1524 | Permease YjgP/YjgQ | |||
| 1525 | R | Hpy12BORF7970P (100% identity) | CCATC | Hpy12SORF1525P |
| 1526 | Outer membrane protein/porin HopK | |||
| 1539 | Transcription termination protein NusA | |||
| 1540 | RM | Hpy12BORF8065P (100% identity) | Hpy12SORF1540P | |
| 1541 | Type III restriction-modification system | |||
| 1576 | 67 aa hypothetical protein | |||
| 1577 | M | M.Hpy12BORF8250P (100% identity) | TGCA | M.Hpy12SORF1577P |
| 1578 | R | Hpy12BORF8250P (100% identity) | TGCA | Hpy12SORF1577P |
| 1579 | Translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 73 | Two-component system response regulator | |||
| 74 | M | M.Hpy12BORF390P (100% identity) | M.Hpy12SORF74P | |
| 75 | R | Hpy12AORF74P (100% identity) | Hpy12SORF74P | |
| 77 | Rod shape-determining protein MreC | |||
| 86 | endonuclease G | |||
| 87 | M | M.Hpy12AORF87P (100% identity) | M.Hpy12SORF87P | |
| 88 | R | Hpy12AORF87P (100% identity) | Hpy12SORF87P | |
| 89 | Biotin synthase | |||
| 901 | 2-oxoglutarate oxidoreductase, gamma subunit | |||
| 902 | R | Hpy12AORF899P (100% identity) | GCAG | Hpy12SORF903P |
| 903 | M | M.Hpy12AORF899P (100% identity) | GCAG | M.Hpy12SORF903P |
| 904 | 54 aa hypothetical protein | |||
| 1540 | type IIS restriction/modification | |||
| 1541 | R | Hpy12BORF8080P (100% identity) | Hpy12SORF1542P | |
| ??? | M | M.Hpy030ORF7320P (96% identity) | M.Hpy12SORF1542P | |
| 1544 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 517 | DNA-cytosine methyltransferase | |||
| 518 | R | Hpy12BMcrBP (100% identity) | Hpy12SMcrBP | |
| 520 | 403 aa hypothetical protein | |||
| 823 | Glutamine synthetase | |||
| 824 | R | Hpy12AGmrSDP (100% identity) | Hpy12SGmrSDP | |
| 825 | LSU ribosomal protein L9p | |||