Helicobacter pylori UM023 |
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Putative Helicobacter pylori UM023 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,623,075 bp
GenBank #: AUSK00000000 (NZ_AUSK00000000)
REBASE acronym: HpyUM023
Org_num: 11535
All begin N197_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5535 | hydroxyethylthiazole kinase | |||
| 5540 | R | HpyT028XVP (97% identity) | HpyUM023ORF5765P | |
| 5545 | S | S.HpyTW23ORF4135P (99% identity) | S.HpyUM023ORF5765P | |
| 5765 | M | M.Hpy66ORF4960P (97% identity) | M.HpyUM023ORF5765P | |
| 5550 | DNA methyltransferase | |||
| 5185 | membrane protein | |||
| 5190 | S | S.Hpy04ORFAP (96% identity) | S.HpyUM023ORF5190P | |
| 5195 | cadmium transporter | |||
| 4160 | polyphosphate kinase | |||
| 4170 | S | S.HpyU201ORF2120P (98% identity) | S.HpyUM023ORF4175P | |
| 4175 | M | M.HpySG15ORF2445P (97% identity) | M.HpyUM023ORF4175P | |
| 4180 | R | Hpyfe104ORF3000P (76% identity) | HpyUM023ORF4175P | |
| 1200 | metal-dependent hydrolase | |||
| 1205 | R | Hpyfe74ORF7605P (96% identity) | HpyUM023ORF1210P | |
| 1210 | M | M.Hpy55ORF1503P (97% identity) | M.HpyUM023ORF1210P | |
| ??? | S | S.HpyP96ORFCP (97% identity) | S.HpyUM023ORF1210P | |
| 1225 | 30 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 590 | RM | Hpybs3ORFIP (95% identity) | HpyUM023ORF590P | |
| 595 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | DEAD/DEAH box helicase | |||
| 1320 | RM | Hpyfe59ORF55P (94% identity) | HpyUM023ORF1320P | |
| 1325 | 29 aa hypothetical protein | |||
| 8265 | ATP-dependent DNA helicase | |||
| ??? | M | M.Hpyfe38ORF2685P (98% identity) | GTNNAC | M.HpyUM023ORF8270P |
| 8275 | R | Hpy828ORF4620P (96% identity) | GTNNAC | HpyUM023ORF8270P |
| 8280 | flagellar hook protein FlgE | |||
| 3735 | elongation factor 4 | |||
| 3740 | M | M.HpyPU006ORF1745P (99% identity) | GCNGC | M.HpyUM023ORF3740P |
| 3745 | flagellar basal body rod protein FlgG | |||
| 5370 | 145 aa hypothetical protein | |||
| 5375 | R | Hpyfe78ORF3885P (100% identity) | CGWCG | HpyUM023ORF5380P |
| 5380 | M | M.Hpyfe8ORF2470P (99% identity) | CGWCG | M.HpyUM023ORF5380P |
| 5385 | osmoprotection protein (proWX) | |||
| 7675 | 144 aa hypothetical protein | |||
| 7680 | M | M.HpyV001XVII (97% identity) | GCGC | M.HpyUM023ORF7680P |
| 7685 | flgM protein | |||
| 6750 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | Hpyfe5ORF4050P (49% identity) | HpyUM023ORF6755P | |
| 6965 | pseudogene | |||
| 8120 | Laminin subunit alpha-2 precursor | |||
| 8185 | R | HpyV006XIIIP (99% identity) | TCNNGA | HpyUM023ORF8180P |
| 8180 | M | M.Hpyfe92ORF2245P (94% identity) | TCNNGA | M.HpyUM023ORF8180P |
| 8175 | 146 aa hypothetical protein | |||
| 1550 | amidophosphoribosyltransferase | |||
| 1555 | RM | Hpyfe126ORF290P (95% identity) | HpyUM023ORF1555P | |
| 1560 | S | S1.Hpyfe96ORF310P (97% identity) | S1.HpyUM023ORF1555P | |
| 1565 | S | S.HpyCHN10ORF7035P (47% identity) | S2.HpyUM023ORF1555P | |
| 1570 | DNA polymerase I | |||
| 1395 | membrane protein | |||
| 1400 | R | HpyMKF8ORF1415P (95% identity) | CCATC | HpyUM023ORF1405P |
| 1405 | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyUM023ORF1405P |
| 1410 | M | M1.HpyH010VI (99% identity) | GATGG | M1.HpyUM023ORF1405P |
| 1415 | permease | |||
| 2350 | malonyl CoA-ACP transacylase | |||
| 2360 | R | Hpyfe113ORF4095P (97% identity) | GATC | HpyUM023ORF2365P |
| 2365 | M | M.Hpyfe95ORF1030P (97% identity) | GATC | M.HpyUM023ORF2365P |
| 2415 | pseudogene | |||
| 5915 | DNA gyrase subunit B | |||
| 5920 | M | M.Hpy32XII (99% identity) | GTAC | M.HpyUM023ORF5920P |
| ??? | R | HpySG14VIIIP (90% identity) | GTAC | HpyUM023ORF5920P |
| 5925 | membrane protein | |||
| 560 | DNA methyltransferase | |||
| ??? | R | HpyGC26ORFGP (98% identity) | GANTC | HpyUM023ORF560P |
| 575 | 56 aa hypothetical protein | |||
| 580 | M | M.HpyGC26ORFGP (100% identity) | GANTC | M.HpyUM023ORF560P |
| ??? | hypothetical protein | |||
| 580 | DNA methylase N-4 | |||
| ??? | RM | hypothetical protein | HpyUM023ORF585P | |
| 1905 | agmatine deiminase | |||
| 1910 | M | M1.HpyKG4VI (97% identity) | CCTC | M1.HpyUM023ORF1910P |
| 1915 | M | M2.HpyMM09VIP (98% identity) | CCTC | M2.HpyUM023ORF1910P |
| 1920 | R | Hpy238ORF325P (96% identity) | CCTC | HpyUM023ORF1910P |
| 1925 | integrase | |||
| 3255 | exodeoxyribonuclease VII large subunit | |||
| 3260 | M | M.HpyUM032XVII (98% identity) | TCGA | M.HpyUM023ORF3260P |
| 3265 | 204 aa hypothetical protein | |||
| 6830 | polysaccharide biosynthesis protein | |||
| 6835 | M | M.Hpyfe99ORF3980P (99% identity) | CCNNGG | M.HpyUM023ORF6835P |
| 6840 | R | HpyMA05VIIP (100% identity) | CCNNGG | HpyUM023ORF6835P |
| 6845 | 95 aa hypothetical protein | |||
| 3270 | 51 aa hypothetical protein | |||
| 3275 | R | HpyK052IVP (98% identity) | CCGG | HpyUM023ORF3280P |
| 3280 | M | M.HpySG36IV (99% identity) | CCGG | M.HpyUM023ORF3280P |
| 3285 | molecular chaperone ClpB | |||
| 5765 | pseudogene | |||
| 5550 | M | M.HpyJSHR31ORF9040P (98% identity) | GGCC | M.HpyUM023ORF5550P |
| ??? | R | hypothetical protein | GGCC | HpyUM023ORF5550P |
| 5565 | membrane protein | |||
| 4600 | hydrolase | |||
| 4605 | M | M.Hpy66XI (99% identity) | CATG | M.HpyUM023ORF4605P |
| ??? | R | Hpyfe1ORF1590P (91% identity) | CATG | HpyUM023ORF4605P |
| 4620 | serine acetyltransferase | |||
| 5720 | catalase | |||
| ??? | R | Hpyfe99ORF5080P (99% identity) | ACGT | HpyUM023ORFAP |
| ??? | M | M.HpySG24ORF2405P (93% identity) | ACGT | M.HpyUM023ORFAP |
| 5730 | type II restriction endonuclease | |||
| ??? | hypothetical protein | |||
| 5730 | R | Hpyfe6ORF4730P (100% identity) | ACNGT | HpyUM023ORF5735P |
| ??? | M | M.Hpyfe17ORF4745P (99% identity) | ACNGT | M.HpyUM023ORF5735P |
| 5745 | GTP-binding protein | |||
| 5750 | glycosyltransferase 9 family protein | |||
| 5755 | M | M.Hpy5ORF5760P (98% identity) | ATTAAT | M.HpyUM023ORF5755P |
| 5760 | membrane protein | |||
| 3520 | 293 aa hypothetical protein | |||
| 3525 | R | HpyTW16VIIP (99% identity) | CTNAG | HpyUM023ORF3530P |
| 3530 | M | M.HpyUM085ORF755P (100% identity) | CTNAG | M.HpyUM023ORF3530P |
| 3535 | 122 aa hypothetical protein | |||
| 1110 | 148 aa hypothetical protein | |||
| 1115 | R | Hpyfe112ORF6720P (98% identity) | TGCA | HpyUM023ORF1120P |
| 1120 | M | M.HpyK93ORF7595P (99% identity) | TGCA | M.HpyUM023ORF1120P |
| 1125 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1315 | M | M.HpyV001ORF7355P (28% identity) | M.HpyUM023ORF1315P | |
| ??? | R | Hpyfe124ORF40P (96% identity) | HpyUM023ORF1315P | |
| 1320 | type IIS restriction-modification protein | |||
| 1780 | biotin synthase | |||
| 1785 | R | HpyKG7ORF7040P (88% identity) | HpyUM023ORF1790P | |
| 1790 | M | M.HpyPF16ORF6530P (96% identity) | M.HpyUM023ORF1790P | |
| 1795 | type II citrate synthase | |||
| 1285 | ATP-dependent DNA helicase RecG | |||
| 1290 | M | M.HpySG04ORF7410P (69% identity) | M.HpyUM023ORF1290P | |