Helicobacter pylori UM077 |
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Putative Helicobacter pylori UM077 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,619,377 bp
GenBank #: AUSQ00000000 (NZ_AUSQ00000000)
REBASE acronym: HpyUM077
Org_num: 11540
All begin N205_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5650 | S | S.HpyF227ORFNP (43% identity) | S.HpyUM077ORF5650P | |
| 5655 | R | HpySG17ORF3385P (96% identity) | HpyUM077ORF5650P | |
| 5660 | hydroxyethylthiazole kinase | |||
| 3110 | 30 aa hypothetical protein | |||
| 3115 | S | S.HpyC122ORF870P (94% identity) | S.HpyUM077ORF3120P | |
| 3120 | M | M.Hpyfe74ORF7605P (97% identity) | M.HpyUM077ORF3120P | |
| 3125 | R | Hpyfe74ORF7605P (89% identity) | HpyUM077ORF3120P | |
| 3130 | metal-dependent hydrolase | |||
| 4665 | membrane protein | |||
| 4680 | S | S.Hpyfe65ORF2980P (85% identity) | S.HpyUM077ORF4680P | |
| 8050 | membrane protein | |||
| 8055 | M | M.HpyTW16ORF2500P (97% identity) | M.HpyUM077ORF8055P | |
| 8060 | S | S.Hpyfe88ORF2995P (76% identity) | S.HpyUM077ORF8055P | |
| 5990 | cadmium transporter | |||
| ??? | S | S.HpyR3cORF5080P (93% identity) | S.HpyUM077ORF5995P | |
| 1675 | polyphosphate kinase | |||
| 1685 | S | S.Hpyfe82ORF4855P (95% identity) | S.HpyUM077ORF1690P | |
| 1690 | M | M.Hpyfe16ORF3160P (97% identity) | M.HpyUM077ORF1690P | |
| 1695 | 48 aa hypothetical protein | |||
| ??? | R | HpyCHN8ORF2215P (87% identity) | HpyUM077ORF1690P | |
| 1700 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3745 | DNA methylase | |||
| 3750 | M | M.HpyCOL210ORF6675P (98% identity) | GATATC | M.HpyUM077ORF3750P |
| 3755 | R | HpySG33ORF370P (99% identity) | GATATC | HpyUM077ORF3750P |
| 3760 | 79 aa hypothetical protein | |||
| 3895 | 31 aa hypothetical protein | |||
| 3900 | M | M2.Hpyfe127ORF6960P (97% identity) | CCTC | M1.HpyUM077ORF3900P |
| 3905 | M | M2.HpyK007ORF310P (98% identity) | CCTC | M2.HpyUM077ORF3900P |
| 3910 | R | HpySW18VIIP (89% identity) | CCTC | HpyUM077ORF3900P |
| 3915 | DNA methylase | |||
| 8155 | catalase | |||
| ??? | R | HpyMA23ORF4150P (98% identity) | ACGT | HpyUM077ORF8165P |
| ??? | M | M.HpyN6ORFE1P (86% identity) | ACGT | M.HpyUM077ORF8165P |
| 8170 | type II restriction endonuclease | |||
| 3910 | restriction endonuclease | |||
| 3915 | M | M.HpyUM085ORF5680P (9% identity) | CCTTC | M.HpyUM077ORF3915P |
| 3920 | sodium:proline symporter | |||
| ??? | hypothetical protein | |||
| 8170 | R | type II restriction endonuclease | ACNGT | HpyUM077ORF8175P |
| 8175 | M | M.Hpyfe59ORF4845P (88% identity) | ACNGT | M.HpyUM077ORF8175P |
| 8180 | GTP-binding protein | |||
| 3755 | type II restriction endonuclease | |||
| ??? | R | HpyBS26ORF7050P (82% identity) | GAAGA | HpyUM077ORF3760P |
| 3775 | chemotaxis protein CheY | |||
| 4145 | malonyl CoA-ACP transacylase | |||
| 4155 | R | HpyTW10VIP (97% identity) | GATC | HpyUM077ORF4160P |
| 4160 | M | M.HpyMA10IX (97% identity) | GATC | M.HpyUM077ORF4160P |
| 4165 | alpha-1,2-fucosyltransferase | |||
| 8185 | glycosyltransferase 9 family protein | |||
| 8195 | M | M.HpySG26II (97% identity) | ATTAAT | M.HpyUM077ORF8195P |
| 8190 | membrane protein | |||
| 7770 | biotin carboxylase | |||
| 7775 | M | M.HpyT028XIII (99% identity) | TCNNGA | M.HpyUM077ORF7775P |
| 7780 | R | Hpyfe86ORF2055P (100% identity) | TCNNGA | HpyUM077ORF7775P |
| 7785 | Laminin subunit alpha-2 precursor | |||
| 3230 | 67 aa hypothetical protein | |||
| 3235 | M | M.HpyP98ORFPP (99% identity) | TGCA | M.HpyUM077ORF3235P |
| 3240 | R | HpyTW08XIP (98% identity) | TGCA | HpyUM077ORF3235P |
| 3245 | DNA methyltransferase | |||
| 3240 | Type II restriction enzyme | |||
| 3245 | M | M.HpyOK304ORFKP (98% identity) | M.HpyUM077ORF3245P | |
| 3250 | 366 aa hypothetical protein | |||
| 7640 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyQ56ORFMP (97% identity) | GTNNAC | M.HpyUM077ORF7645P |
| ??? | R | HpyOK316ORFA1P (95% identity) | GTNNAC | HpyUM077ORF7645P |
| 7655 | flagellar hook protein FlgE | |||
| 4760 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 4965 | RM | HpyK51ORF610P (42% identity) | HpyUM077ORF4965AP | |
| 4765 | RM | HpyF235ORFNP (66% identity) | HpyUM077ORF4965BP | |
| 4770 | membrane protein | |||
| 3825 | nicotinate-nucleotide pyrophosphorylase | |||
| 3830 | RM | Hpyfe68ORF6820P (89% identity) | HpyUM077ORF3830P | |
| 3835 | DNA methylase N-4 | |||
| 3830 | DNA methyltransferase | |||
| 3835 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.HpyUM077ORF3835P |
| 3840 | R | HpySG38XP (98% identity) | GANTC | HpyUM077ORF3835P |
| 3845 | peptidase S41 | |||
| 7100 | flgM protein | |||
| 7105 | M | M.HpyFD506ORFNP (99% identity) | GCGC | M.HpyUM077ORF7105P |
| 7110 | 144 aa hypothetical protein | |||
| 2795 | DNA polymerase I | |||
| 2800 | S | S.HpyFD506ORFM1P (97% identity) | S.HpyUM077ORF2805P | |
| ??? | RM | Hpyfe38ORF270P (98% identity) | HpyUM077ORF2805P | |
| 2810 | amidophosphoribosyltransferase | |||
| 5820 | 33 aa hypothetical protein | |||
| 5825 | M | M.HpyUM111ORF8540P (100% identity) | CGWCG | M.HpyUM077ORF5825P |
| 5830 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | HpyUM077ORF5825P |
| 5835 | osmoprotection binding protein | |||
| 6845 | serine acetyltransferase | |||
| ??? | R | HpyTW01IP (90% identity) | CATG | HpyUM077ORF6860P |
| 6860 | M | M.HpyV004I (97% identity) | CATG | M.HpyUM077ORF6860P |
| 6865 | hydrolase | |||
| 2540 | membrane protein | |||
| 2545 | R | Hpyfe123ORF3040P (99% identity) | GTAC | HpyUM077ORF2550P |
| 2550 | M | M.Hpy377ORFPP (98% identity) | GTAC | M.HpyUM077ORF2550P |
| 2555 | DNA gyrase subunit B | |||
| 3015 | 30 aa hypothetical protein | |||
| 3020 | RM | Hpyfe102ORF60P (91% identity) | HpyUM077ORF3020P | |
| 3025 | DEAD/DEAH box helicase | |||
| 740 | exodeoxyribonuclease VII large subunit | |||
| 745 | M | M.HpyUM032XVII (98% identity) | TCGA | M.HpyUM077ORF745P |
| 750 | 204 aa hypothetical protein | |||
| 750 | 204 aa hypothetical protein | |||
| ??? | R | HpyU204ORF1290P (86% identity) | CCGG | HpyUM077ORF765P |
| 765 | M | M.HpyK013III (100% identity) | CCGG | M.HpyUM077ORF765P |
| 770 | molecular chaperone ClpB | |||
| 1005 | 293 aa hypothetical protein | |||
| 1010 | R | Hpyfe110ORF5990P (100% identity) | CTNAG | HpyUM077ORF1015P |
| 1015 | M | M.HpyOK301ORFRP (99% identity) | CTNAG | M.HpyUM077ORF1015P |
| 1020 | 125 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3050 | M | M.Hpyfe5ORF40P (66% identity) | M.HpyUM077ORF3050P | |
| 3055 | ATP-dependent DNA helicase RecG | |||
| 3735 | rod shape-determining protein MreC | |||
| 3740 | R | HpySG38ORF205P (97% identity) | HpyUM077ORF3745P | |
| 3745 | M | M.HpyCHN4XI (97% identity) | M.HpyUM077ORF3745P | |
| 3750 | DNA adenine methylase | |||
| 6625 | 42 aa hypothetical protein | |||
| 6630 | M | M.HpyMKF3ORF1329P (96% identity) | M.HpyUM077ORF6630P | |
| ??? | R | Hpyfe120ORF630P (94% identity) | HpyUM077ORF6630P | |
| 6640 | biotin synthase | |||
| 3020 | type II restriction endonuclease | |||
| 3025 | R | HpySG19ORF7240P (97% identity) | HpyUM077ORF3030P | |
| 3030 | M | M.HpyHP34ORF7070P (29% identity) | M.HpyUM077ORF3030P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2500 | 50S ribosomal protein L9 | |||
| 2505 | R | HpyMA10GmrSDP (84% identity) | HpyUM077GmrSDP | |
| 2510 | glutamine synthetase | |||