Helicobacter pylori UM038 |
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Putative Helicobacter pylori UM038 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,762,049 bp
GenBank #: AUSL00000000 (NZ_AUSL00000000)
REBASE acronym: HpyUM038
Org_num: 11536
All begin N199_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5090 | S | S.HpyKG7ORF3955P (96% identity) | S.HpyUM038ORF5090P | |
| 5095 | membrane protein | |||
| 7275 | S | S.HpyAR9ORF2745P (60% identity) | S.HpyUM038ORF7275P | |
| 7280 | R | Hpyfe107ORF5130P (96% identity) | HpyUM038ORF7275P | |
| 7285 | hydroxyethylthiazole kinase | |||
| 8060 | S | S.HpyU429XV (86% identity) | S.HpyUM038ORF8065P | |
| 8065 | M | M.HpyMA18ORF4320P (97% identity) | M.HpyUM038ORF8065P | |
| 8070 | DNA methyltransferase | |||
| 8550 | S | S.HpyKG7ORF3955P (52% identity) | S.HpyUM038ORF8550P | |
| 8555 | cadmium transporter | |||
| 2090 | 631 aa hypothetical protein | |||
| 2095 | R | HpyAL03ORFXP (82% identity) | HpyUM038ORF2100P | |
| 2100 | M | M.Hpyfe115ORF4950P (94% identity) | M.HpyUM038ORF2100P | |
| 2105 | S | S.Hpy3192ORF3080P (99% identity) | S.HpyUM038ORF2100P | |
| 2115 | polyphosphate kinase | |||
| 865 | 30 aa hypothetical protein | |||
| 870 | S | S.HpySG17ORF365P (99% identity) | S.HpyUM038ORF880P | |
| 875 | CAAX protease | |||
| 880 | M | M.HpyTW18IX (98% identity) | M.HpyUM038ORF880P | |
| 885 | R | Hpyfe126ORF7605P (97% identity) | HpyUM038ORF880P | |
| 890 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8645 | membrane protein | |||
| 8650 | M | M.Hpyfe39ORF4900P (98% identity) | ATTAAT | M.HpyUM038ORF8650P |
| 8655 | glycosyltransferase 9 family protein | |||
| 8065 | type I restriction endonuclease | |||
| 8070 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.HpyUM038ORF8070P |
| 8225 | R | Hpyfe102ORF3140P (98% identity) | GGCC | HpyUM038ORF8070P |
| 8075 | membrane protein | |||
| 2795 | 125 aa hypothetical protein | |||
| 2800 | M | M.HpySG17IV (99% identity) | CTNAG | M.HpyUM038ORF2800P |
| 2805 | R | Hpyfe72ORF5515P (97% identity) | CTNAG | HpyUM038ORF2800P |
| 2810 | 293 aa hypothetical protein | |||
| 8660 | GTP-binding protein | |||
| 8665 | M | M.HpyTW17V (99% identity) | ACNGT | M.HpyUM038ORF8665P |
| 8670 | R | HpyK037ORF2425P (79% identity) | ACNGT | HpyUM038ORF8665P |
| 8675 | DNA methyltransferase | |||
| 8670 | type II restriction endonuclease | |||
| 8675 | M | M.Hpyfe62ORF4750P (99% identity) | ACGT | M.HpyUM038ORF8675P |
| 8680 | R | Hpyfe110ORF5235P (100% identity) | ACGT | HpyUM038ORF8675P |
| 8685 | catalase | |||
| 1000 | 67 aa hypothetical protein | |||
| 1005 | M | M.Hpyfe122ORF7390P (100% identity) | TGCA | M.HpyUM038ORF1005P |
| 1010 | R | Hpyfe112ORF6720P (98% identity) | TGCA | HpyUM038ORF1005P |
| 1015 | 177 aa hypothetical protein | |||
| 6925 | DNA gyrase subunit B | |||
| 6930 | M | M.HpyH1ORFIP (96% identity) | GTAC | M.HpyUM038ORF6930P |
| 6935 | R | HpyMA10XP (100% identity) | GTAC | HpyUM038ORF6930P |
| 6940 | membrane protein | |||
| 8490 | 49 aa hypothetical protein | |||
| 8495 | M | M.Hpyfe24ORF555P (100% identity) | CGCG | M.HpyUM038ORF8495P |
| 8500 | R | HpyAL05ORFOP (99% identity) | CGCG | HpyUM038ORF8495P |
| 8505 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 8290 | ATP-dependent DNA helicase | |||
| 8295 | M | M.Hpyfe2ORF2675P (94% identity) | GTNNAC | M.HpyUM038ORF8295P |
| 8300 | R | Hpyfe7ORF2690P (97% identity) | GTNNAC | HpyUM038ORF8295P |
| 8305 | flagellar hook protein FlgE | |||
| 1875 | malonyl CoA-ACP transacylase | |||
| 1885 | R | HpyU425VIIP (95% identity) | GATC | HpyUM038ORF1890P |
| 1890 | M | M.HpyTW23II (98% identity) | GATC | M.HpyUM038ORF1890P |
| 1895 | alpha-1,2-fucosyltransferase | |||
| 7615 | flgM protein | |||
| 7620 | M | M.HpyK020XVI (99% identity) | GCGC | M.HpyUM038ORF7620P |
| 7625 | 144 aa hypothetical protein | |||
| 6355 | serine acetyltransferase | |||
| ??? | R | HpyJ015IP (97% identity) | CATG | HpyUM038ORF6365P |
| 6365 | M | M.HpyHK711ORFUP (99% identity) | CATG | M.HpyUM038ORF6365P |
| 6370 | hydrolase | |||
| 3505 | N-acetylneuraminate synthase | |||
| 3510 | R | HpyML2ORFJP (96% identity) | HpyUM038ORF3510P | |
| 3515 | ATPase AAA | |||
| 3040 | molecular chaperone ClpB | |||
| 3045 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.HpyUM038ORF3045P |
| 3050 | R | HpySG36IVP (97% identity) | CCGG | HpyUM038ORF3045P |
| 3055 | exodeoxyribonuclease VII large subunit | |||
| 4120 | 477 aa hypothetical protein | |||
| ??? | RM | HpyIN1ORF3320P (82% identity) | HpyUM038ORF4125P | |
| 4135 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 4965 | biotin carboxylase | |||
| 4970 | M | M.HpySG02XII (100% identity) | TCNNGA | M.HpyUM038ORF4970P |
| 4975 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | HpyUM038ORF4970P |
| 4980 | Laminin subunit alpha-2 precursor | |||
| 1475 | 108 aa hypothetical protein | |||
| 1760 | M | M1.HpyK118VIII (99% identity) | GAAGA | M1.HpyUM038ORF1760P |
| 1480 | M | M1.Hpyfe49ORF7125P (98% identity) | GAAGA | M2.HpyUM038ORF1760P |
| 1485 | R | Hpyfe61ORF7120P (97% identity) | GAAGA | HpyUM038ORF1760P |
| 1490 | chemotaxis protein CheY | |||
| 1540 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hpy52ORF48P (85% identity) | HpyUM038ORF1545P | |
| 1550 | DNA methylase N-4 | |||
| ??? | hypothetical protein | |||
| 1550 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.HpyUM038ORF1550P |
| 1555 | R | HpySG38XP (96% identity) | GANTC | HpyUM038ORF1550P |
| 1560 | peptidase S41 | |||
| 550 | DNA polymerase I | |||
| 555 | S | S.HpyT028ORF6965P (95% identity) | S.HpyUM038ORF560P | |
| 560 | RM | Hpyfe83ORF275P (98% identity) | HpyUM038ORF560P | |
| 565 | amidophosphoribosyltransferase | |||
| 1605 | 31 aa hypothetical protein | |||
| 1610 | M | M2.Hpyfe29ORF6800P (98% identity) | CCTC | M1.HpyUM038ORF1610P |
| 1615 | M | M2.HpyFD506ORFXP (99% identity) | CCTC | M2.HpyUM038ORF1610P |
| 1620 | R | HpySG32IVP (100% identity) | CCTC | HpyUM038ORF1610P |
| 1625 | DNA methyltransferase | |||
| 785 | 32 aa hypothetical protein | |||
| 790 | RM | Hpyfe81ORF55P (94% identity) | HpyUM038ORF790P | |
| 795 | 713 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5530 | type III restriction-modification enzyme domain | |||
| 5535 | R | HpyU011ORF6810P (89% identity) | HpyUM038ORF5530P | |
| 5540 | M | M.HpyK052ORF6440P (97% identity) | M.HpyUM038ORF5530P | |
| 5545 | endonuclease | |||
| 795 | 713 aa hypothetical protein | |||
| 800 | R | HpyK016ORF7125P (97% identity) | HpyUM038ORF805P | |
| 805 | M | M.HpyTW04ORF7140P (98% identity) | M.HpyUM038ORF805P | |
| 810 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6970 | glutamine synthetase | |||
| ??? | R | HpySG38GmrSDP (27% identity) | HpyUM038GmrSDAP | |
| 6975 | R | Hpyfe49GmrSD2P (58% identity) | HpyUM038GmrSDBP | |
| 6980 | 50S ribosomal protein L9 | |||
| 3510 | llaJI restriction endonuclease | |||
| 3515 | R | R1.HpySG38ORF6280P (96% identity) | HpyUM038McrBP | |
| 3520 | 86 aa hypothetical protein | |||