Helicobacter pylori UM085 |
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Putative Helicobacter pylori UM085 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,645,062 bp
GenBank #: AUSP00000000 (NZ_AUSP00000000)
REBASE acronym: HpyUM085
Org_num: 11539
All begin N204_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4870 | S | S.HpyMA03ORF4145P (61% identity) | S.HpyUM085ORF4870P | |
| 4875 | R | HpyMA03ORF4145P (100% identity) | HpyUM085ORF4870P | |
| 4880 | hydroxyethylthiazole kinase | |||
| 3760 | metal-dependent hydrolase | |||
| ??? | R | HpyMA03XP (100% identity) | HpyUM085ORF3775P | |
| 3775 | M | M.HpyMA03X (100% identity) | M.HpyUM085ORF3775P | |
| 3780 | S | S.HpyMA03X (99% identity) | S.HpyUM085ORF3775P | |
| 3785 | 43 aa hypothetical protein | |||
| 65 | 631 aa hypothetical protein | |||
| ??? | R | HpyMA03ORF2250P (99% identity) | HpyUM085ORF90P | |
| 90 | M | M.HpyMA03ORF2250P (100% identity) | M.HpyUM085ORF90P | |
| 95 | S | S.HpyMA03ORF2250P (100% identity) | S.HpyUM085ORF90P | |
| 105 | polyphosphate kinase | |||
| 3125 | 30 aa hypothetical protein | |||
| 3130 | S | S.HpyMA03XIV (60% identity) | S.HpyUM085ORF3130P | |
| 6895 | membrane protein | |||
| 6905 | M | M.HpyMA03ORF4145P (100% identity) | M.HpyUM085ORF6905P | |
| 6900 | S | S.HpyMA03ORF4145P (97% identity) | S.HpyUM085ORF6905P | |
| 5190 | cadmium transporter | |||
| 5195 | S | S.HpyMA03XIV (96% identity) | S.HpyUM085ORF5195P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7515 | membrane protein | |||
| 7520 | M | M.HpyMA03III (100% identity) | ATTAAT | M.HpyUM085ORF7520P |
| 7525 | glycosyltransferase 9 family protein | |||
| 8175 | 144 aa hypothetical protein | |||
| 8180 | M | M.HpyMA03XV (100% identity) | GCGC | M.HpyUM085ORF8180P |
| 8185 | flgM protein | |||
| 7530 | GTP-binding protein | |||
| 7535 | M | M.HpyMA03ORF2345P (100% identity) | ACNGT | M.HpyUM085ORF7535P |
| 7540 | R | HpyMA03ORF2345P (100% identity) | ACNGT | HpyUM085ORF7535P |
| 7545 | DNA methyltransferase | |||
| 7655 | DNA gyrase subunit B | |||
| 7660 | M | M.HpyMKM5ORF881P (98% identity) | GTAC | M.HpyUM085ORF7660P |
| 7665 | R | HpyMA03XIIP (100% identity) | GTAC | HpyUM085ORF7660P |
| 7670 | membrane protein | |||
| 7540 | type II restriction endonuclease | |||
| 7545 | M | M.HpyTW01ORF2320P (100% identity) | ACGT | M.HpyUM085ORF7545P |
| 7550 | R | HpyTW01ORF2320P (100% identity) | ACGT | HpyUM085ORF7545P |
| 7555 | 50 aa hypothetical protein | |||
| 7985 | biotin carboxylase | |||
| 7990 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.HpyUM085ORF7990P |
| 7995 | R | HpyMA03VIIIP (100% identity) | TCNNGA | HpyUM085ORF7990P |
| 8000 | Laminin subunit alpha-2 precursor | |||
| 5595 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyMA03ORF250P (97% identity) | HpyUM085ORF5600P | |
| 5605 | DNA methylase N-4 | |||
| 7855 | flagellar hook protein FlgE | |||
| 7860 | R | HpyMA03XIIIP (99% identity) | GTNNAC | HpyUM085ORF7865P |
| ??? | M | M.HpyMA03XIII (100% identity) | GTNNAC | M.HpyUM085ORF7865P |
| 7870 | ATP-dependent DNA helicase | |||
| ??? | hypothetical protein | |||
| 5605 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.HpyUM085ORF5605P |
| 5610 | R | HpyMA03IVP (100% identity) | GANTC | HpyUM085ORF5605P |
| 5615 | peptidase S41 | |||
| 1865 | glycerol-3-phosphate dehydrogenase subunit C | |||
| ??? | RM | HpyMA03ORF3275P (100% identity) | HpyUM085ORF1870P | |
| 1880 | membrane protein | |||
| 5910 | HrgA protein | |||
| 5915 | M | M.HpyMA03XI (100% identity) | GATC | M.HpyUM085ORF5915P |
| 5920 | alpha-1,2-fucosyltransferase | |||
| 4090 | amidophosphoribosyltransferase | |||
| ??? | RM | Hpy274ORF1659P (97% identity) | HpyUM085ORF4095P | |
| 4105 | S | S.HpyMA03ORF6950P (49% identity) | S.HpyUM085ORF4095P | |
| 4110 | DNA polymerase I | |||
| 5655 | 31 aa hypothetical protein | |||
| 5660 | M | M1.HpyMA03VII (100% identity) | CCTC | M1.HpyUM085ORF5660P |
| 5665 | M | M2.HpyMA03VIIP (100% identity) | CCTC | M2.HpyUM085ORF5660P |
| 5670 | R | HpyMA03VIIP (100% identity) | CCTC | HpyUM085ORF5660P |
| 5675 | hin4II restriction endonuclease | |||
| 5670 | restriction endonuclease | |||
| 5675 | R | HpyMA03IXP (100% identity) | CCTTC | HpyUM085ORF5680P |
| 5680 | M | M.HpyMA03IX (100% identity) | CCTTC | M.HpyUM085ORF5680P |
| 5685 | sodium:proline symporter | |||
| 3620 | 366 aa hypothetical protein | |||
| 3625 | M | M.HpyMA03ORF7355P (100% identity) | M.HpyUM085ORF3625P | |
| 3630 | Type II restriction enzyme | |||
| 3860 | 717 aa hypothetical protein | |||
| 3865 | RM | HpyMA03ORF7160P (100% identity) | HpyUM085ORF3865P | |
| 3870 | 30 aa hypothetical protein | |||
| 3625 | DNA methyltransferase | |||
| 3630 | R | HpyMA03VP (100% identity) | TGCA | HpyUM085ORF3635P |
| 3635 | M | M.HpySG04XIII (100% identity) | TGCA | M.HpyUM085ORF3635P |
| 3640 | 67 aa hypothetical protein | |||
| 6215 | serine acetyltransferase | |||
| ??? | R | HpyMA03IP (100% identity) | CATG | HpyUM085ORF6220P |
| 6220 | M | M.HpyMA03I (100% identity) | CATG | M.HpyUM085ORF6220P |
| 6225 | hydrolase | |||
| 1965 | polysaccharide biosynthesis protein | |||
| 1970 | M | M.HpySG07ORF3370P (97% identity) | GGNNCC | M.HpyUM085ORF1970P |
| 1975 | R | Hpyfe85ORF3790P (100% identity) | GGNNCC | HpyUM085ORF1970P |
| 1980 | 3-5 exonuclease | |||
| 1465 | N-acetylneuraminate synthase | |||
| 1470 | R | R2.HpyMA03ORF935P (100% identity) | HpyUM085ORF1480P | |
| ??? | ATPase AAA | |||
| ??? | ATPase AAA | |||
| 1475 | 256 aa hypothetical protein | |||
| 1480 | M | M1.HpyMA03ORF935P (100% identity) | M.HpyUM085ORF1480P | |
| 1490 | elongation factor P | |||
| 530 | 156 aa hypothetical protein | |||
| 535 | M | M.HpyMA03ORF1815P (100% identity) | GCNGC | M.HpyUM085ORF535P |
| 540 | elongation factor 4 | |||
| 750 | 125 aa hypothetical protein | |||
| 755 | M | M.HpyUM023ORF3530P (100% identity) | CTNAG | M.HpyUM085ORF755P |
| 760 | R | Hpyfe110ORF5990P (100% identity) | CTNAG | HpyUM085ORF755P |
| 765 | 293 aa hypothetical protein | |||
| 995 | molecular chaperone ClpB | |||
| 1000 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.HpyUM085ORF1000P |
| ??? | R | HpyMA03IIP (100% identity) | CCGG | HpyUM085ORF1000P |
| 1015 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4325 | biotin synthase | |||
| ??? | R | HpyMA03ORF6600P (95% identity) | HpyUM085ORF4335P | |
| 4335 | M | M.HpyMA03ORF6600P (100% identity) | M.HpyUM085ORF4335P | |
| 4340 | type II citrate synthase | |||
| 3845 | ATP-dependent DNA helicase RecG | |||
| 3850 | M | M.HpyMA03XVI (100% identity) | M.HpyUM085ORF3850P | |
| 3855 | R | HpyMA03XVIP (100% identity) | HpyUM085ORF3850P | |
| 3860 | 717 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7700 | glutamine synthetase | |||
| 7705 | R | HpyMA03GmrSDP (100% identity) | HpyUM085GmrSDP | |
| 7710 | 50S ribosomal protein L9 | |||
| 1470 | llaJI restriction endonuclease | |||
| ??? | R | ATPase AAA | HpyUM085McrBP | |
| ??? | ATPase AAA | |||
| ??? | ATPase AAA | |||
| ??? | R | R1.HpyMA03ORF1005P (49% identity) | HpyUM085McrB2P | |
| 1475 | 256 aa hypothetical protein | |||