Helicobacter pylori UM067 |
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Putative Helicobacter pylori UM067 RM systems
Ref: Rehvathy,V. et al. Genome Announc 1 (5), e00687-13 (2013)
REBASE ref # 16618
Contig set: 1,680,838 bp
GenBank #: AUSN00000000 (NZ_AUSN00000000)
REBASE acronym: HpyUM067
Org_num: 11538
All begin N202_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6745 | S | S.HpyR10ORF3835P (47% identity) | S.HpyUM067ORF6745P | |
| 6750 | R | HpyNAB47ORFFP (95% identity) | HpyUM067ORF6745P | |
| 6760 | hydroxyethylthiazole kinase | |||
| ??? | S | S.HpyKG4ORF7060P (93% identity) | S.HpyUM067ORF25P | |
| 15 | CAAX protease | |||
| 25 | M | M.HpyKH14ORFBP (91% identity) | M.HpyUM067ORF25P | |
| 30 | R | HpyMA16XIIP (95% identity) | HpyUM067ORF25P | |
| 35 | metal-dependent hydrolase | |||
| 8705 | formyltetrahydrofolate deformylase | |||
| ??? | S | S.HpyMA25ORF7380P (96% identity) | S.HpyUM067ORF8710P | |
| 6230 | membrane protein | |||
| 6235 | S | S.HpyUM067ORF6745P (96% identity) | S.HpyUM067ORF6235P | |
| 8040 | 30 aa hypothetical protein | |||
| ??? | S | S.HpyUM067ORF8710P (62% identity) | S.HpyUM067ORF8045P | |
| 7720 | 43 aa hypothetical protein | |||
| 7725 | M | M.HpyKH45ORFYP (90% identity) | M.HpyUM067ORF7725P | |
| 7730 | S | S.HpyMM03XV (64% identity) | S.HpyUM067ORF7725P | |
| 7060 | cadmium transporter | |||
| 7065 | S | S.HpySW10ORF3905P (87% identity) | S.HpyUM067ORF7065P | |
| 2900 | polyphosphate kinase | |||
| 2910 | S | S.HpyKH32ORFYP (98% identity) | S.HpyUM067ORF2910P | |
| 2915 | N-6 DNA methylase | |||
| 2910 | type I restriction endonuclease subunit S | |||
| 2915 | M | M.HpySW27ORF2170P (93% identity) | M.HpyUM067ORF2915P | |
| 2920 | R | HpyMA25ORF2275P (68% identity) | HpyUM067ORF2915P | |
| 2925 | 44 aa hypothetical protein | |||
| 4700 | FAD-dependent thymidylate synthase | |||
| ??? | S | S.HpyUM067ORF8710P (62% identity) | S.HpyUM067ORF4705P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7155 | RM | HpyNP13ORF6490P (64% identity) | HpyUM067ORF7155P | |
| 7160 | nicotinate-nucleotide pyrophosphorylase | |||
| 8460 | membrane protein | |||
| 8465 | M | M.HpyFD430ORFGP (98% identity) | ATTAAT | M.HpyUM067ORF8465P |
| 8470 | glycosyltransferase 9 family protein | |||
| 8475 | GTP-binding protein | |||
| 8480 | M | M.HpyKH4ORFE1P (98% identity) | ACNGT | M.HpyUM067ORF8480P |
| 8485 | R | HpyKH14ORFWP (100% identity) | ACNGT | HpyUM067ORF8480P |
| 8490 | DNA methyltransferase | |||
| 8485 | type II restriction endonuclease | |||
| 8490 | M | M.HpyKH10ORFA1P (98% identity) | ACGT | M.HpyUM067ORF8490P |
| 8495 | R | HpyKH10ORFA1P (97% identity) | ACGT | HpyUM067ORF8490P |
| 8500 | 43 aa hypothetical protein | |||
| 7115 | peptidase S41 | |||
| ??? | R | HpyKH15ORFB1P (97% identity) | GANTC | HpyUM067ORF7150P |
| 7135 | 56 aa hypothetical protein | |||
| 7150 | M | M.Hpy70ORF49P (99% identity) | GANTC | M.HpyUM067ORF7150P |
| 7140 | 143 aa hypothetical protein | |||
| 2030 | exodeoxyribonuclease VII large subunit | |||
| 2035 | M | M.HpyFD662ORF4100P (95% identity) | TCGA | M.HpyUM067ORF2035P |
| 2040 | 215 aa hypothetical protein | |||
| 7770 | 144 aa hypothetical protein | |||
| 7775 | M | M.HpyMA16XIII (97% identity) | GCGC | M.HpyUM067ORF7775P |
| 7780 | flgM protein | |||
| 2035 | DNA methyltransferase | |||
| 2040 | R | HpyT021ORF1300P (92% identity) | CCGG | HpyUM067ORF2045P |
| 2045 | M | M.Hpy397ORF3645P (98% identity) | CCGG | M.HpyUM067ORF2045P |
| 2050 | molecular chaperone ClpB | |||
| 8140 | flagellar hook protein FlgE | |||
| 8145 | R | Hpyfe107ORF5410P (97% identity) | GTNNAC | HpyUM067ORF8150P |
| ??? | M | M.HpyMM01XIII (97% identity) | GTNNAC | M.HpyUM067ORF8150P |
| 8155 | ATP-dependent DNA helicase | |||
| 7150 | pseudogene | |||
| ??? | RM | hypothetical protein | HpyUM067ORF7140P | |
| 7210 | chemotaxis protein CheY | |||
| 7215 | R | HpyKH7ORFUP (96% identity) | GAAGA | HpyUM067ORF7220P |
| 7220 | M | M1.HpyKH43ORFWP (98% identity) | GAAGA | M1.HpyUM067ORF7220P |
| 7225 | 287 aa hypothetical protein | |||
| 1125 | HrgA like protein | |||
| 1130 | M | M.HpyMA25VI (98% identity) | GATC | M.HpyUM067ORF1130P |
| 1135 | alpha-1,2-fucosyltransferase | |||
| 5360 | hydrolase | |||
| 5365 | M | M.HpyKH22ORFNP (98% identity) | CATG | M.HpyUM067ORF5365P |
| 5370 | 59 aa hypothetical protein | |||
| 4390 | DNA polymerase I | |||
| 4395 | S | S.HpyKH2ORFNP (53% identity) | S1.HpyUM067ORF4405P | |
| 4400 | S | S1.HpySP11ORF7170P (95% identity) | S2.HpyUM067ORF4405P | |
| 4405 | RM | HpyKH43ORFTP (96% identity) | HpyUM067ORF4405P | |
| 4410 | amidophosphoribosyltransferase | |||
| 4895 | Laminin subunit alpha-2 precursor | |||
| 4900 | R | Hpy72ORF1040P (97% identity) | TCNNGA | HpyUM067ORF4905P |
| 4905 | M | M.HpyKH40ORFEP (98% identity) | TCNNGA | M.HpyUM067ORF4905P |
| 4910 | biotin carboxylase | |||
| 4535 | permease | |||
| 4540 | M | M.HpyU009ORF7220P (100% identity) | GDGCHC | M.HpyUM067ORF4540P |
| ??? | R | HpySW17ORF7020P (74% identity) | CCATC | HpyUM067ORF4540P |
| 4545 | membrane protein | |||
| 4540 | DNA methyltransferase | |||
| 4715 | R | HpyLI12ORF7385P (63% identity) | HpyUM067ORF4715P | |
| 4545 | membrane protein | |||
| 4625 | 32 aa hypothetical protein | |||
| 4630 | RM | HpyBG5XIV (89% identity) | HpyUM067ORF4630P | |
| 4635 | DEAD/DEAH box helicase | |||
| 665 | agmatine deiminase | |||
| 670 | M | M1.HpyKH22ORFOP (97% identity) | M1.HpyUM067ORF675P | |
| 675 | M | M2.HpyMA04VIIP (98% identity) | CCTC | M2.HpyUM067ORF675P |
| 680 | R | HpyMA04VIIP (93% identity) | CCTC | HpyUM067ORF675P |
| 685 | DNA methyltransferase | |||
| 3935 | 152 aa hypothetical protein | |||
| 3940 | RM | HpyKH2ORFTP (73% identity) | HpyUM067ORF3940P | |
| 3945 | membrane protein | |||
| 4020 | polysaccharide biosynthesis protein | |||
| 4025 | M | M.HpyKH10ORFFP (96% identity) | CCNNGG | M.HpyUM067ORF4025P |
| 4030 | R | HpyKH31ORFFP (100% identity) | CCNNGG | HpyUM067ORF4025P |
| 4035 | 3-5 exonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7225 | 287 aa hypothetical protein | |||
| 7230 | M | M.HpyMA16ORF6805P (55% identity) | M1.HpyUM067ORF7230P | |
| 7235 | M | DNA methyltransferase | M2.HpyUM067ORF7230P | |
| 7240 | R | HpyFD423ORFLP (94% identity) | HpyUM067ORF7230P | |
| 7245 | rod shape-determining protein MreC | |||
| 3545 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 3550 | R | HpyFD430ORFI1P (96% identity) | HpyUM067ORF4200P | |
| 4200 | M | M.HpyKH22ORFBP (96% identity) | M.HpyUM067ORF4200P | |
| 3555 | 54 aa hypothetical protein | |||
| 7300 | 40 aa hypothetical protein | |||
| 7305 | M | M.HpyH013ORF7420P (94% identity) | M.HpyUM067ORF7305P | |
| 7310 | R | HpyI009ORF7025P (92% identity) | HpyUM067ORF7305P | |
| 4630 | type II restriction endonuclease | |||
| 4635 | R | HpyKH17ORFXP (96% identity) | HpyUM067ORF4640P | |
| ??? | M | M.HpyUM084ORF2180P (96% identity) | M.HpyUM067ORF4640P | |
| 4650 | ATP-dependent DNA helicase RecG | |||