Helicobacter pylori PZ5056 |
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Putative Helicobacter pylori PZ5056 RM systems
Ref: Sheh,A. et al. Genome Announc 1 (5), e00736-13 (2013)
REBASE ref # 16661
Contig set: 1,603,341 bp
GenBank #: ASYU00000000 (NZ_ASYU00000000)
REBASE acronym: Hpy5056
Org_num: 11512
All begin L933_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7865 | S | S.HpySW22ORF7180P (48% identity) | S.Hpy5056ORF7865P | |
| 7870 | DNA polymerase I | |||
| 8610 | R | HpyC82ORFMP (74% identity) | Hpy5056ORF8615P | |
| 8615 | M | M.HpyDO4ORF2115P (95% identity) | M.Hpy5056ORF8615P | |
| 8620 | S | S.Hpyfe118ORF5095P (98% identity) | S.Hpy5056ORF8615P | |
| 8630 | polyphosphate kinase | |||
| ??? | M | M.HpyPE16XIV (39% identity) | M.Hpy5056ORFAP | |
| 1270 | DNA methyltransferase | |||
| 7825 | S | S.HpyIS2ORF3390P (50% identity) | S.Hpy5056ORF7825P | |
| 7830 | 29 aa hypothetical protein | |||
| 4890 | cag pathogenicity island protein | |||
| 4895 | S | S.HpyCOL203ORF7320P (95% identity) | S.Hpy5056ORF4900P | |
| 4900 | M | M.Hpy5016ORF3855P (96% identity) | M.Hpy5056ORF4900P | |
| 4905 | R | HpyL018ORF7450P (95% identity) | Hpy5056ORF4900P | |
| 4910 | metal-dependent hydrolase | |||
| 6945 | hydroxyethylthiazole kinase | |||
| 6950 | R | HpyC100XVP (94% identity) | Hpy5056ORF6960P | |
| 6955 | S | S.HpySP506ORF3975P (96% identity) | S.Hpy5056ORF6960P | |
| 6960 | M | M.HpyH010ORF4025P (35% identity) | M.Hpy5056ORF6960P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8925 | RM | Hpy397ORF5610P (29% identity) | Hpy5056ORF8925P | |
| 8930 | 828 aa hypothetical protein | |||
| 5605 | glycosyltransferase 9 family protein | |||
| 5610 | M | M.HpySP405III (99% identity) | ATTAAT | M.Hpy5056ORF5610P |
| 5615 | membrane protein | |||
| 6800 | molecular chaperone ClpB | |||
| 6805 | M | M.HpyT010III (99% identity) | CCGG | M.Hpy5056ORF6805P |
| 6810 | R | HpyPE117VP (98% identity) | CCGG | Hpy5056ORF6805P |
| 6815 | 31 aa hypothetical protein | |||
| ??? | RM | Hpy120ORF7200P (92% identity) | Hpy5056ORF4650P | |
| 4660 | amidophosphoribosyltransferase | |||
| ??? | hypothetical protein | |||
| 1270 | M | M.HpyU433ORF4085P (99% identity) | GGCC | M.Hpy5056ORF1270P |
| 1275 | R | HpyKE21ORF10190P (99% identity) | GGCC | Hpy5056ORF1270P |
| 1280 | membrane protein | |||
| ??? | RM | HpyMT5111ORF3160P (63% identity) | Hpy5056ORF4535P | |
| 4540 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 8905 | type III restriction endonuclease subunit M | |||
| 8915 | M | M2.HpyCOL318IV (100% identity) | GAAGA | M.Hpy5056ORF8915P |
| 8920 | R | HpyNG10ORF6525P (97% identity) | GAAGA | Hpy5056ORF8915P |
| 8375 | DNA gyrase subunit B | |||
| 8380 | M | M.HpyMT5105IX (100% identity) | GTAC | M.Hpy5056ORF8380P |
| 8385 | R | HpyMT5125XIIP (99% identity) | GTAC | Hpy5056ORF8380P |
| 8390 | membrane protein | |||
| ??? | RM | HpySWT13XVIII (86% identity) | Hpy5056ORF4060P | |
| 4070 | 32 aa hypothetical protein | |||
| ??? | R | HpyI023ORF6755P (97% identity) | GANTC | Hpy5056ORF215P |
| 210 | 56 aa hypothetical protein | |||
| 215 | M | M.HpyNCI39ORFZP (98% identity) | GANTC | M.Hpy5056ORF215P |
| 220 | DNA methyltransferase | |||
| 1385 | HrgA protein | |||
| 1390 | M | M.HpyL019II (97% identity) | GATC | M.Hpy5056ORF1390P |
| 1395 | alpha-1,2-fucosyltransferase | |||
| 4240 | agmatine deiminase | |||
| 4245 | M | M1.HpyP004ORF255P (94% identity) | CCTC | M1.Hpy5056ORF4245P |
| 4250 | M | M2.HpyH020VP (89% identity) | CCTTC | M2.Hpy5056ORF4245P |
| 4255 | 419 aa hypothetical protein | |||
| 9370 | 37 aa hypothetical protein | |||
| 9375 | M | M2.HpyAR4ORF6720P (77% identity) | M1.Hpy5056ORF9375P | |
| 9380 | M | M1.HpyT014ORF7370P (99% identity) | M2.Hpy5056ORF9375P | |
| ??? | R | HpyL023ORF7305P (80% identity) | Hpy5056ORF9375P | |
| 9390 | cytochrome C biogenesis protein CcsA | |||
| 7365 | 156 aa hypothetical protein | |||
| 7370 | M | M.HpyU311ORF1795P (100% identity) | GCNGC | M.Hpy5056ORF7370P |
| 7375 | elongation factor 4 | |||
| 3130 | 144 aa hypothetical protein | |||
| 3135 | M | M.HpyU301XIV (97% identity) | GCGC | M.Hpy5056ORF3135P |
| 3140 | flgM protein | |||
| 1090 | catalase | |||
| 1095 | R | non-functional type II restriction endonuclease | ACGT | Hpy5056ORF1100P |
| 1100 | M | M.Hpy340ORF7150P (98% identity) | ACGT | M.Hpy5056ORF1100P |
| 1105 | type II restriction endonuclease | |||
| 8550 | 128 aa hypothetical protein | |||
| 8555 | M | M.HpyU204VII (100% identity) | CTNAG | M.Hpy5056ORF8555P |
| 8560 | R | HpyNCI49XP (98% identity) | CTNAG | Hpy5056ORF8555P |
| 8565 | 265 aa hypothetical protein | |||
| 6815 | 31 aa hypothetical protein | |||
| 6820 | M | M.Hpy5AEK1ORFVP (97% identity) | TCGA | M.Hpy5056ORF6820P |
| 6825 | exodeoxyribonuclease VII large subunit | |||
| 6775 | flagellar hook protein FlgE | |||
| 6780 | R | HpyF020XIIP (93% identity) | GTNNAC | Hpy5056ORF6785P |
| ??? | M | M.HpyCOL122X (98% identity) | GTNNAC | M.Hpy5056ORF6785P |
| 6790 | ATP-dependent DNA helicase | |||
| 1100 | DNA methyltransferase | |||
| 1105 | R | HpyPO104IIP (98% identity) | ACNGT | Hpy5056ORF1110P |
| 1110 | M | M.HpySP413II (99% identity) | ACNGT | M.Hpy5056ORF1110P |
| 5240 | Laminin subunit alpha-2 precursor | |||
| 5245 | R | HpyMT5125XVP (98% identity) | TCNNGA | Hpy5056ORF5250P |
| 5250 | M | M.HpyU429XII (99% identity) | TCNNGA | M.Hpy5056ORF5250P |
| 5295 | permease | |||
| 5300 | M | M1.HpyPR07IV (98% identity) | GATGG | M1.Hpy5056ORF5300P |
| ??? | M | M2.HpyNCI55XII (100% identity) | CCATC | M2.Hpy5056ORF5300P |
| 5310 | R | HpyCOL102IVP (95% identity) | CCATC | Hpy5056ORF5300P |
| 5315 | membrane protein | |||
| 795 | hydrolase | |||
| 800 | M | M.Hpy18ORF6020P (98% identity) | CATG | M.Hpy5056ORF800P |
| 805 | R | Hpy5086ORF7015P (92% identity) | CATG | Hpy5056ORF800P |
| 2300 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 2305 | R | HpyZ010ORF6825P (100% identity) | CGCG | Hpy5056ORF2310P |
| 2310 | M | M.HpyBR23ORF7365P (100% identity) | CGCG | M.Hpy5056ORF2310P |
| 2315 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7210 | nicotinate-nucleotide pyrophosphorylase | |||
| 7215 | RM | Hpy5086ORF8535P (94% identity) | Hpy5056ORF7215P | |
| 9225 | ATPase AAA | |||
| 9230 | R | R2.HpyCOL6ORF860P (98% identity) | Hpy5056ORF9230P | |
| 9235 | N-acetylneuraminate synthase | |||
| 5475 | DEAD/DEAH box helicase | |||
| 5480 | RM | 87 aa hypothetical protein | Hpy5056ORF5480P | |
| 9025 | polysaccharide biosynthesis protein | |||
| 9030 | M | M.HpyPOR114IV (99% identity) | CCNNGG | M.Hpy5056ORF9030P |
| ??? | R | HpyMT5105IIP (99% identity) | CCNNGG | Hpy5056ORF9030P |
| 9035 | acetone carboxylase subunit gamma | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3990 | M | 250 aa hypothetical protein | M.Hpy5056ORF3990P | |
| 6485 | M | 99 aa hypothetical protein | M.Hpy5056ORF6485P | |
| 6490 | R | HpyCOL308ORF7520P (92% identity) | Hpy5056ORF6485P | |
| 6495 | rod shape-determining protein MreC | |||
| 8905 | M | M.HpyU403ORF7495P (94% identity) | M.Hpy5056ORF8905P | |
| 8915 | 287 aa hypothetical protein | |||
| 6730 | endonuclease | |||
| 6735 | M | M.HpySP509ORF7640P (96% identity) | M.Hpy5056ORF6735P | |
| 6740 | pseudogene | |||
| 5460 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPE136XIX (96% identity) | M.Hpy5056ORF5465P | |
| 5475 | R | HpyC22ORF5580P (94% identity) | Hpy5056ORF5465P | |
| 5480 | 87 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9220 | 86 aa hypothetical protein | |||
| 9225 | R | R1.HpyME40ORF845P (98% identity) | Hpy5056McrBP | |
| 9230 | llaJI restriction endonuclease | |||