Helicobacter pylori PZ5024 |
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Putative Helicobacter pylori PZ5024 RM systems
Ref: Sheh,A. et al. Genome Announc 1 (5), e00736-13 (2013)
REBASE ref # 16661
Contig set: 1,522,037 bp
GenBank #: ASYS00000000 (NZ_ASYS00000000)
REBASE acronym: Hpy5024
Org_num: 11499
All begin L931_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8660 | S | 150 aa hypothetical protein | S.Hpy5024ORF8660P | |
| 7420 | S | S.HpyGRE039ORF2670P (18% identity) | S.Hpy5024ORF7425P | |
| 7425 | M | M.HpyU306IX (32% identity) | M.Hpy5024ORF7425P | |
| 8120 | S | type I restriction modification protein | S.Hpy5024ORF8120P | |
| ??? | S | type I restriction modification DNA specificity domain protein | S.Hpy5024ORFAP | |
| 9470 | R | HpyMT5135ORF4055P (98% identity) | Hpy5024ORF9470P | |
| 9475 | 66 aa hypothetical protein | |||
| 9480 | S | restriciton endonuclease subunit S | S.Hpy5024ORF9470P | |
| 7925 | membrane protein | |||
| 7930 | M | M.HpySWT05VI (64% identity) | M.Hpy5024ORF7930P | |
| 4830 | polyphosphate kinase | |||
| 4845 | S | S.Hpy5005ORF1780P (100% identity) | S.Hpy5024ORF4850P | |
| 4850 | M | N-6 DNA methylase | M.Hpy5024ORF4850P | |
| 1515 | relaxase | |||
| ??? | R | HpyU419ORF2145P (78% identity) | Hpy5024ORF1520P | |
| 1530 | 631 aa hypothetical protein | |||
| 3945 | 30 aa hypothetical protein | |||
| 3950 | S | S.Hpy5005ORF4735P (92% identity) | S.Hpy5024ORF3955P | |
| 3955 | M | M.HpyBR18ORF6795P (96% identity) | M.Hpy5024ORF3955P | |
| 3960 | R | HpyMT5105VP (96% identity) | Hpy5024ORF3955P | |
| 3965 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3655 | M | DNA methylase N-4 | GATC | M.Hpy5024ORF3655P |
| 3670 | R | Hpy5005ORF3010P (100% identity) | GATC | Hpy5024ORF3655P |
| 3665 | malonyl CoA-ACP transacylase | |||
| 8060 | 290 aa hypothetical protein | |||
| 8065 | M | M.HpyBR13IX (100% identity) | CCGG | M.Hpy5024ORF8065P |
| 8070 | R | Hpy5004ORF6615P (100% identity) | CCGG | Hpy5024ORF8065P |
| 8075 | DNA methyltransferase | |||
| ??? | M | DNA methylase N-4 | GATC | M.Hpy5024ORFBP |
| 1275 | 47 aa hypothetical protein | |||
| 6245 | M | M.HpyU432III (97% identity) | ATTAAT | M.Hpy5024ORF6245P |
| 6250 | glycosyltransferase 9 family protein | |||
| 2725 | M | M.HpyCOL302XVI (98% identity) | TCNNGA | M.Hpy5024ORF2725P |
| 2655 | R | Hpy5005ORF615P (100% identity) | TCNNGA | Hpy5024ORF2725P |
| 2660 | Laminin subunit alpha-2 precursor | |||
| 405 | chemotaxis protein CheY | |||
| 410 | C | C2.HpyU005IVP (98% identity) | C.Hpy5024ORF420P | |
| 415 | R | HpySP308VIIP (99% identity) | GTCTC | Hpy5024ORF420P |
| 420 | M | M2.HpyME27ORF2110P (100% identity) | GTCTC | M1.Hpy5024ORF420P |
| 425 | M | M1.HpyT005ORF2145P (100% identity) | GTCTC | M2.Hpy5024ORF420P |
| 430 | 59 aa hypothetical protein | |||
| 785 | R | Hpy5005ORF5305P (100% identity) | GANTC | Hpy5024ORF790P |
| 790 | M | M.Hpy5005ORF5305P (100% identity) | GANTC | M.Hpy5024ORF790P |
| 795 | DNA methyltransferase | |||
| 9435 | 176 aa hypothetical protein | |||
| 9440 | RM | Hpy5005ORF4830P (99% identity) | Hpy5024ORF9440P | |
| 9445 | 720 aa hypothetical protein | |||
| 3295 | acetone carboxylase subunit gamma | |||
| 3300 | R | HpyMTT60ORFNP (98% identity) | CCNNGG | Hpy5024ORF3305P |
| ??? | M | M.Hpy5005ORF6450P (99% identity) | CCNNGG | M.Hpy5024ORF3305P |
| 3315 | polysaccharide biosynthesis protein | |||
| 8345 | catalase | |||
| 8350 | R | HpyCOL208ORF2270P (100% identity) | ACGT | Hpy5024ORF8355P |
| 8355 | M | M.HpyCOL208ORF2270P (99% identity) | ACGT | M.Hpy5024ORF8355P |
| 8360 | type II restriction endonuclease | |||
| 630 | agmatine deiminase | |||
| 635 | M | M1.HpyKE21ORF2430P (98% identity) | CCTC | M1.Hpy5024ORF635P |
| 640 | M | M2.HpyNG19IVP (98% identity) | CCTC | M2.Hpy5024ORF635P |
| 645 | 419 aa hypothetical protein | |||
| 2180 | 828 aa hypothetical protein | |||
| 2185 | RM | HpyBR13ORF3290P (23% identity) | Hpy5024ORF2185P | |
| 3690 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyU432X (98% identity) | GTNNAC | M.Hpy5024ORF3695P |
| 3700 | R | HpyISR10IXP (97% identity) | GTNNAC | Hpy5024ORF3695P |
| 3705 | flagellar hook protein FlgE | |||
| 790 | DNA methylase N-4 | |||
| ??? | RM | HpyCOL208ORF6675P (95% identity) | Hpy5024ORF795P | |
| 805 | nicotinate-nucleotide pyrophosphorylase | |||
| 6270 | DNA gyrase subunit B | |||
| 6275 | M | M.Hpy5005ORF1280P (100% identity) | GTAC | M.Hpy5024ORF6275P |
| ??? | R | HpyMT5135VIIP (100% identity) | GTAC | Hpy5024ORF6275P |
| 6290 | membrane protein | |||
| 8070 | endonuclease MjaVIP | |||
| 8075 | M | M.HpyNCI57VI (98% identity) | TCGA | M.Hpy5024ORF8075P |
| 8080 | exodeoxyribonuclease VII large subunit | |||
| 4510 | chemotaxis protein CheY | |||
| ??? | R | HpyGH9ORF6745P (99% identity) | GAAGA | Hpy5024ORF4505P |
| 4525 | 67 aa hypothetical protein | |||
| 5575 | 144 aa hypothetical protein | |||
| 5580 | M | M.HpyCOL208XVII (99% identity) | GCGC | M.Hpy5024ORF5580P |
| 5585 | flgM protein | |||
| 640 | type II restriction endonuclease | |||
| 645 | R | HpyMT5105IVP (100% identity) | CCTTC | Hpy5024ORF650P |
| 650 | M | M.Hpy5005ORF3220P (100% identity) | CCTTC | M.Hpy5024ORF650P |
| 655 | sodium:proline symporter | |||
| 8170 | 31 aa hypothetical protein | |||
| 8175 | M | M.HpyME40XII (99% identity) | TCNGA | M.Hpy5024ORF8175P |
| 8180 | R | Hpy5005ORF4000P (100% identity) | TCNGA | Hpy5024ORF8175P |
| 8185 | purine nucleoside phosphorylase | |||
| 8355 | DNA methyltransferase | |||
| 8360 | R | HpyMT5105XIVP (100% identity) | ACNGT | Hpy5024ORF8365P |
| 8365 | M | M.HpyU406ORF2240P (99% identity) | ACNGT | M.Hpy5024ORF8365P |
| 235 | amidophosphoribosyltransferase | |||
| 240 | RM | HpyMT5111ORF7145P (99% identity) | Hpy5024ORF240P | |
| 245 | S | S.HpySP202ORF7230AP (95% identity) | S1.Hpy5024ORF240P | |
| 250 | S | S2.HpyGCT43ORF1120P (87% identity) | S2.Hpy5024ORF240P | |
| 255 | DNA polymerase I | |||
| 7810 | DNA methylase | |||
| 7820 | M | M.HpyMT5119ORF7395P (96% identity) | GAAGA | M.Hpy5024ORF7820P |
| 7825 | 34 aa hypothetical protein | |||
| 7655 | permease | |||
| 7660 | M | M2.HpyCOL208IV (99% identity) | GATGG | M1.Hpy5024ORF7660P |
| 7665 | M | M1.HpyPOR110II (99% identity) | CCATC | M2.Hpy5024ORF7660P |
| 7670 | R | HpyMT5135IIIP (97% identity) | CCATC | Hpy5024ORF7660P |
| 8045 | hydrolase | |||
| 8050 | M | M.HpySP207I (97% identity) | CATG | M.Hpy5024ORF8050P |
| 8055 | 59 aa hypothetical protein | |||
| 6145 | glycerol-3-phosphate dehydrogenase subunit C | |||
| 6150 | RM | HpyCOL108ORF3210P (61% identity) | Hpy5024ORF6150P | |
| 4905 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 4910 | M | M.HpyU003VII (100% identity) | GAATTC | M.Hpy5024ORF4910P |
| 4915 | R | HpyU420VIP (100% identity) | GAATTC | Hpy5024ORF4910P |
| 4920 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3870 | M | M.Hpy5005ORF4805P (70% identity) | M.Hpy5024ORF3870P | |
| 3875 | ATP-dependent DNA helicase RecG | |||
| 7800 | rod shape-determining protein MreC | |||
| 7805 | R | HpyI009ORF6950P (93% identity) | Hpy5024ORF7810P | |
| 7810 | M | M.HpyBR14XIV (96% identity) | M.Hpy5024ORF7810P | |
| 7820 | type II restriction endonuclease subunit M | |||
| 9300 | endonuclease | |||
| 9310 | M | M.Hpy5005ORF4230P (100% identity) | M.Hpy5024ORF9310P | |
| 9315 | R | HpyCOL208ORF7510P (87% identity) | Hpy5024ORF9310P | |
| 9320 | 47 aa hypothetical protein | |||
| 9445 | 720 aa hypothetical protein | |||
| 9450 | R | HpyCA4ORF6765P (93% identity) | Hpy5024ORF9455P | |
| 9455 | M | M.HpyMT5135ORF7190P (29% identity) | M.Hpy5024ORF9455P | |