Haemophilus parasuis 12939 |
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Putative Haemophilus parasuis 12939 RM systems
Ref: Kuehn,J.S. et al. Genome Announc 1 (5), e00739-13 (2013)
REBASE ref # 16660
Contig set: 1,953,029 bp
GenBank #: APBW00000000 (NZ_APBW00000000)
REBASE acronym: Hpa12939
Org_num: 11492
All begin HPS12939_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1217 | WLM domain protein | |||
| ??? | R | Hpa120103ORFAP (96% identity) | Hpa12939ORF1222P | |
| 1220 | TIR domain protein | |||
| 1221 | S | S.Hpa120103ORFAP (100% identity) | S.Hpa12939ORF1222P | |
| ??? | M | M.Hpa120103ORFAP (91% identity) | M.Hpa12939ORF1222P | |
| 1224 | tRNA-modifying protein ygfZ | |||
| 380 | 48 aa hypothetical protein | |||
| 381 | M | M.HpaSH03ORF2530P (99% identity) | M.Hpa12939ORF381P | |
| 382 | S | S.Gpa104ORFJP (85% identity) | S.Hpa12939ORF381P | |
| 649 | AcrR family transcriptional regulator | |||
| 650 | R | GpaHF57ORF9645P (99% identity) | Hpa12939ORF656P | |
| 651 | 145 aa hypothetical protein | |||
| 652 | 255 aa hypothetical protein | |||
| 653 | S | S.Gpad76ORF9705P (52% identity) | S1.Hpa12939ORF656P | |
| 654 | S | S1.Hpa1401ORF6765P (100% identity) | S2.Hpa12939ORF656P | |
| 655 | glutamate synthase | |||
| 656 | M | M.Hpa120103ORFFP (100% identity) | M.Hpa12939ORF656P | |
| 657 | naphthoate synthase | |||
| 774 | phosphoserine transaminase | |||
| ??? | M | 81 aa hypothetical protein | M.Hpa12939ORFAP | |
| 775 | type I restriction-modification system | |||
| ??? | 81 aa hypothetical protein | |||
| 775 | M | M.GpaHPS7ORF5710P (80% identity) | M.Hpa12939ORF775P | |
| 776 | S | S.Gpa1807ORF6225P (70% identity) | S.Hpa12939ORF775P | |
| 777 | 343 aa hypothetical protein | |||
| 778 | 41 aa hypothetical protein | |||
| 779 | R | Gpa1807ORF6225P (99% identity) | Hpa12939ORF775P | |
| 780 | histidinol-phosphate transaminase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1202 | transposase IS4 family protein | |||
| 1203 | RM | Hpa120103ORFBP (100% identity) | Hpa12939ORF1203P | |
| 1204 | S | S.HpaD74ORF1277P (100% identity) | S.Hpa12939ORF1203P | |
| 1205 | 37 aa hypothetical protein | |||
| 430 | R | Hpa74IP (17% identity) | AAGCTT | Hpa12939ORF431P |
| 431 | M | M.Hpa120103ORFDP (100% identity) | AAGCTT | M.Hpa12939ORF431P |
| 432 | valine--tRNA ligase | |||
| 1659 | transcriptional regulator, MarR family | |||
| 1660 | RM | HpaMNHORF1496P (100% identity) | Hpa12939ORF1660P | |
| 1661 | S | S.HpaMNHORF1496P (98% identity) | S1.Hpa12939ORF1660P | |
| 1662 | S | S2.Hpa120103ORFEP (95% identity) | S2.Hpa12939ORF1660P | |
| 1663 | DNA-binding protein | |||
| 1990 | neurotransmitter symporter family protein | |||
| 1991 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.Hpa12939ORF1991P |
| 1992 | 3-dehydroquinate synthase | |||
| 81 | chromosome partition protein mukE | |||
| ??? | M | M.HpaNagORF227P (100% identity) | CCGG | M.Hpa12939ORF82P |
| 83 | 199 aa hypothetical protein | |||
| 966 | 98 aa hypothetical protein | |||
| ??? | M | Hpa120103ORFKP (37% identity) | M.Hpa12939ORF966P | |
| 969 | 150 aa hypothetical protein | |||