Haemophilus parasuis Nagasaki |
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Putative Haemophilus parasuis Nagasaki RM systems
Ref: Kuehn,J.S. et al. Genome Announc 1 (5), e00739-13 (2013)
REBASE ref # 16660
Contig set: 2,178,597 bp
GenBank #: APBT00000000 (NZ_APBT00000000)
REBASE acronym: HpaNag
Org_num: 11489
All begin HPSNAG_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1653 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 1654 | M | M.HpaNNII (100% identity) | M.HpaNagORF1654P | |
| 1655 | 163 aa hypothetical protein | |||
| 1656 | 392 aa hypothetical protein | |||
| 1657 | R | HpaNNIIP (100% identity) | HpaNagORF1654P | |
| 1658 | type I restriction modification DNA specificity | |||
| 692 | 48 aa hypothetical protein | |||
| 693 | M | M.HpaNNORF4230P (100% identity) | M.HpaNagORF693P | |
| 694 | S | S2.HpaNNORF4230P (100% identity) | S1.HpaNagORF693P | |
| 695 | S | S1.HpaNNORF4230P (100% identity) | S2.HpaNagORF693P | |
| 696 | anticodon nuclease | |||
| 697 | R | HpaNNORF4230P (100% identity) | HpaNagORF693P | |
| 698 | apolipoprotein N-acyltransferase | |||
| 318 | phosphoserine transaminase | |||
| 319 | M | M.Hpa33ORF7204P (100% identity) | M.HpaNagORF319P | |
| 320 | type I restriction modification DNA specificity | |||
| 321 | R | HpaNNORF6450P (100% identity) | HpaNagORF319P | |
| 322 | histidinol-phosphate transaminase | |||
| 1801 | 51 aa hypothetical protein | |||
| 1802 | M | M.HpaNNORF1115P (100% identity) | M.HpaNagORF1802P | |
| 1803 | glutamate synthase alpha subunit | |||
| 1804 | S | S.HpaSH03ORF10045P (37% identity) | S1.HpaNagORF1802P | |
| 1805 | S | S1.HpaNNORF1115P (100% identity) | S2.HpaNagORF1802P | |
| 1806 | 255 aa hypothetical protein | |||
| 1807 | 117 aa hypothetical protein | |||
| 1808 | R | HpaNNORF1115P (100% identity) | HpaNagORF1802P | |
| 1809 | 71 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1917 | 86 aa hypothetical protein | |||
| 1918 | M | 143 aa hypothetical protein | BA | M.HpaNagORF1918P |
| 1919 | tRNA ribosyltransferase-isomerase | |||
| 1947 | 86 aa hypothetical protein | |||
| 1948 | M | M.HpaNNORFNP (86% identity) | M.HpaNagORF1948P | |
| 1949 | membrane protein | |||
| 862 | aspartate-semialdehyde dehydrogenase | |||
| 863 | RM | M.HpaNNORF3345P (100% identity) | HpaNagORF863P | |
| 864 | transposase | |||
| 780 | protein-(glutamine-N5) methyltransferase, | |||
| 781 | R | HpaNNORF3850P (100% identity) | GCGC | HpaNagORF782P |
| 782 | M | M.HpaSHORF791P (100% identity) | GCGC | M.HpaNagORF782P |
| 783 | peptide chain release factor 1 | |||
| 1884 | 134 aa hypothetical protein | |||
| 1885 | RM | M1.HpaSH03ORF7930P (100% identity) | HpaNagORF1885P | |
| 1886 | restriction system endonuclease | |||
| 1885 | type III restriction system methylase | |||
| 1886 | RM | M2.HpaSH03ORF7930P (100% identity) | HpaNagORF1886P | |
| 1887 | type III restriction enzyme, res subunit | |||
| 1886 | restriction system endonuclease | |||
| 1887 | RM | HpaSH03ORF7930P (100% identity) | HpaNagORF1887P | |
| 1888 | PIN domain protein | |||
| 226 | chromosome partition protein mukE | |||
| ??? | M | M.HpaNNORF6885P (100% identity) | CCGG | M.HpaNagORF227P |
| 228 | 199 aa hypothetical protein | |||
| 1544 | 101 aa hypothetical protein | |||
| 1545 | RM | HpaNNORF865P (100% identity) | HpaNagORF1545P | |
| 1546 | S | S2.HpaNNORFDP (100% identity) | S.HpaNagORF1545P | |
| 1547 | type I restriction modification DNA specificity | |||
| 2289 | neurotransmitter symporter family protein | |||
| 2290 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.HpaNagORF2290P |
| 2291 | 3-dehydroquinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1408 | transposase zinc-ribbon domain protein | |||
| 1409 | R | HpaST41ORF1100P (100% identity) | HpaNagORF1410P | |
| 1410 | M | M.HpaST41ORF1100P (100% identity) | M.HpaNagORF1410P | |
| 1411 | 41 aa hypothetical protein | |||
| 1221 | 355 aa hypothetical protein | |||
| 1222 | R | HpaNNORF1380P (100% identity) | CTCC | HpaNagORF1223P |
| ??? | M | M.HpaNNORF1380P (100% identity) | CTCC | M.HpaNagORF1223P |
| 1225 | ketol-acid reductoisomerase | |||