Comamonadaceae bacterium CR |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Comamonadaceae bacterium CR RM systems
Ref: Liu,Z. et al. unpublished
REBASE ref # 20812
Complete sequence: 2,991,840 bp
GenBank #: CP004885
REBASE acronym: CbaCR
Org_num: 11406
All begin Cenrod_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 708 | plasmid stabilization protein | |||
| 709 | R | BspNHORF22295P (90% identity) | CbaCRORF709P | |
| 710 | 49 aa hypothetical protein | |||
| 711 | KilA domain protein | |||
| 712 | S | S.AaeZSORF7105P (57% identity) | S.CbaCRORF709P | |
| 713 | 882 aa hypothetical protein | |||
| 714 | RecG-like helicase | |||
| 715 | M | M.AfeYL25ORF11280P (92% identity) | M.CbaCRORF709P | |
| 716 | transposase | |||
| 1290 | 874 aa hypothetical protein | |||
| 1291 | M | M.Hsp20947ORF13570P (25% identity) | M.CbaCRORF1291P | |
| 1292 | mannose-1-phosphate guanylyltransferase | |||
| 1306 | M | M.AspI09ORF38250P (71% identity) | M.CbaCRORF1306P | |
| 1307 | S | S.Ror23ORF29040P (53% identity) | S.CbaCRORF1306P | |
| 1308 | transcriptional regulator | |||
| 1309 | cytotoxic translational repressor | |||
| 1310 | R | UspCCC34ORF18695P (80% identity) | CbaCRORF1306P | |
| 1311 | transposase | |||
| 2428 | transposase | |||
| 2429 | R | SspTTNORF499P (78% identity) | CbaCRORF2434P | |
| 2430 | virulence-related protein | |||
| 2431 | S | S.SspAH1ORF1240P (35% identity) | S1.CbaCRORF2434P | |
| 2432 | S | S.Tca7334I (32% identity) | S2.CbaCRORF2434P | |
| 2433 | DNA-binding domain protein | |||
| 2542 | 357 aa hypothetical protein | |||
| 2543 | M | M.Tte58ORF2655P (91% identity) | M.CbaCRORF2543P | |
| 2544 | 183 aa hypothetical protein | |||
| 2560 | methyl-accepting chemotaxis protein | |||
| 2561 | R | EhoC309ORFEP (74% identity) | CbaCRORF2564P | |
| 2562 | 353 aa hypothetical protein | |||
| 2563 | S | S.Rps1931ORF2785P (89% identity) | S.CbaCRORF2564P | |
| 2564 | M | M.Bch19884ORFHP (88% identity) | M.CbaCRORF2564P | |
| 2565 | 167 aa hypothetical protein | |||
| 2702 | transposase | |||
| 2703 | M | M.Hsp1641ORF5435P (95% identity) | M.CbaCRORF2703P | |
| 2704 | 220 aa hypothetical protein | |||
| 2705 | ATPase-like protein | |||
| 2706 | S | S.MspS3LSCORF15910P (63% identity) | S.CbaCRORF2703P | |
| 2707 | R | PspMBI7IP (91% identity) | CbaCRORF2703P | |
| 2708 | ATP-dependent DNA helicase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 153 | 92 aa hypothetical protein | |||
| 154 | M | M.Mme286ORFX1P (63% identity) | CTGCAG | M.CbaCRORF154P |
| 155 | R | KnaDS12ORF1080P (87% identity) | CTGCAG | CbaCRORF154P |
| 156 | 140 aa hypothetical protein | |||
| 228 | signal transduction protein | |||
| 229 | RM | Bmu8756ORF405P (66% identity) | CbaCRORF229P | |
| 230 | iron complex outermembrane recepter protein | |||
| 581 | DNA/RNA SNF2 family helicase | |||
| 582 | RM | Aba4572ORF2315P (46% identity) | CbaCRORF582P | |
| 583 | ATPase-like protein | |||
| 868 | 84 aa hypothetical protein | |||
| 869 | M | M.Cpi72ORF17415P (74% identity) | M.CbaCRORF869P | |
| 870 | nucleic acid-binding-like protein | |||
| 1454 | glycogen metabolism protein GlgX | |||
| 1455 | RM | type II restriction enzyme methyltransferase | CbaCRORF1455P | |
| 1456 | 477 aa hypothetical protein | |||
| 1687 | general secretion pathway protein L | |||
| 1688 | M | DNA methyltransferase-like protein | RGATCY | M.CbaCRORF1688P |
| 1689 | topoisomerase IV subunit A | |||
| 2161 | 79 aa hypothetical protein | |||
| 2162 | R | Dli5ac10ORF34950P (80% identity) | GCCNNNNNGGC | CbaCRORF2163P |
| 2163 | M | M.GsuRed1I (86% identity) | GCCNNNNNGGC | M.CbaCRORF2163P |
| 2164 | 76 aa hypothetical protein | |||
| 2246 | 63 aa hypothetical protein | |||
| 2247 | M | M.AteNZORF12290P (69% identity) | M.CbaCRORF2247P | |
| 2248 | R | OcyMTP1ORFCP (46% identity) | CbaCRORF2247P | |
| 2249 | 101 aa hypothetical protein | |||
| 2477 | 41 aa hypothetical protein | |||
| 2478 | R | Bsp40ORFLP (78% identity) | CAGCTG | CbaCRORF2479P |
| 2479 | M | M.PspSCADCORF209235P (85% identity) | CAGCTG | M.CbaCRORF2479P |
| 2480 | transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1272 | 244 aa hypothetical protein | |||
| 1273 | M | M.AspSHORF14425P (79% identity) | M.CbaCRORF1273P | |
| 1274 | virulence-related protein | |||
| 1275 | R | Rma82ORF8025P (83% identity) | CbaCRORF1273P | |
| 1276 | ATPase-like protein | |||
| 1326 | transcriptional regulator | |||
| 1327 | M | M.Nla10618ORF609P (43% identity) | M.CbaCRORF1327P | |
| 1328 | 95 aa hypothetical protein | |||
| 1329 | 69 aa hypothetical protein | |||
| 1330 | R | SspSXG1ORFAP (82% identity) | CbaCRORF1327P | |
| 1331 | 50 aa hypothetical protein | |||
| 1334 | PIN domain nucleic acid-binding-like protein | |||
| 1339 | R | Pba1013ORF655P (62% identity) | CbaCRORF1343P | |
| 1343 | M | M.Avi180ORF1538P (63% identity) | M.CbaCRORF1343P | |
| 2231 | 78 aa hypothetical protein | |||
| 2232 | M | M.AcoSSA1ORF10690P (85% identity) | M.CbaCRORF2232P | |
| 2233 | DUF1016 N-terminal domain-containing protein | |||
| 2235 | ribosomal protein L31 | |||
| 2236 | type III restriction protein res subunit | |||
| 2237 | 212 aa hypothetical protein | |||
| 2238 | phosphatase-like protein | |||
| 2239 | R | MspFAM1ORFBP (88% identity) | CbaCRORF2232P | |
| 2240 | ABC-type molybdate transporter substrate-binding | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1984 | retron-type reverse transcriptase | |||
| 1985 | R | MspLWBMrrP (98% identity) | CbaCRMrrP | |
| 1986 | Zn-dependent protease | |||