Helicobacter pylori 26695-1CH |
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Putative Helicobacter pylori 26695-1CH RM systems
Ref: Yamaoka,Y. et al. unpublished
REBASE ref # 16571
Complete sequence: 1,667,302 bp
GenBank #: AP013355
REBASE acronym: HpyA1CH
Org_num: 11338
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyS299ORF3810P (100% identity) | S.HpyA1CHORFWP | |
| ??? | M | M.HpyS299ORF3810P (100% identity) | M.HpyA1CHORFWP | |
| ??? | R | HpyS299ORF3810P (100% identity) | HpyA1CHORFWP | |
| ??? | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyA1CHORFPP |
| ??? | R | HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | HpyA1CHORFOP |
| ??? | S | S.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | S.HpyA1CHORFOP |
| ??? | M | M.HpyRif2ORF4365P (100% identity) | CTANNNNNNNNTGT | M.HpyA1CHORFOP |
| ??? | R | HpyS299ORF7180P (100% identity) | HpyA1CHORFFP | |
| ??? | M | M.HpyS299ORF7180P (100% identity) | M.HpyA1CHORFFP | |
| ??? | S | S.HpyRif2ORF7260P (100% identity) | S.HpyA1CHORFFP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyA1CHORFB1P |
| ??? | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyA1CHORFB1P |
| ??? | R | HpyRif1ORF230P (100% identity) | CCTC | HpyA1CHORFB1P |
| ??? | 419 aa hypothetical protein | |||
| ??? | HNH endonuclease | |||
| ??? | R | HpyS299VIIIP (100% identity) | CCTTC | HpyA1CHORFC1P |
| ??? | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyA1CHORFC1P |
| ??? | R | HpyS299VP (100% identity) | GATC | HpyA1CHORFA1P |
| ??? | M | M.HpyS299V (100% identity) | GATC | M.HpyA1CHORFA1P |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyA1CHORFZP |
| ??? | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyA1CHORFZP |
| ??? | M | M.HpyS299VII (100% identity) | TCGA | M.HpyA1CHORFYP |
| ??? | type II DNA modification enzyme | |||
| ??? | R | HpyRif2ORF1870P (100% identity) | TCNNGA | HpyA1CHORFXP |
| ??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyA1CHORFXP |
| ??? | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyA1CHORFTP |
| ??? | glycosyltransferase 9 family protein | |||
| ??? | glycosyltransferase 9 family protein | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyA1CHORFUP |
| ??? | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyA1CHORFUP |
| ??? | DNA -methyltransferase | |||
| ??? | 170 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyA1CHORFVP |
| ??? | R | HpyS299ORF3700P (100% identity) | ACGT | HpyA1CHORFVP |
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyA1CHORFSP |
| ??? | R | HpyRif2ORFDP (100% identity) | GTAC | HpyA1CHORFSP |
| ??? | RM | HpyRif2ORFGP (100% identity) | HpyA1CHORFQP | |
| ??? | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyA1CHORFNP |
| ??? | M | M.HpyRif2ORF4690P (100% identity) | GTNNAC | M.HpyA1CHORFNP |
| ??? | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyA1CHORFMP |
| ??? | M | M.HpyS299I (100% identity) | CATG | M.HpyA1CHORFLP |
| ??? | R | HpyRif2ORF6260P (100% identity) | CATG | HpyA1CHORFLP |
| ??? | R | HpyS299ORF8615P (100% identity) | GANTC | HpyA1CHORFJP |
| ??? | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyA1CHORFJP |
| ??? | Type IIG R-M system | |||
| ??? | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyRif2ORF6990P (100% identity) | HpyA1CHORFKP | |
| ??? | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyA1CHORFHP |
| ??? | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyA1CHORFHP |
| ??? | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyA1CHORFHP |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | S | S.HpyA1ORFDP (100% identity) | S.HpyA1CHORFEP | |
| ??? | RM | HpyS299ORF6805P (100% identity) | HpyA1CHORFEP | |
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyA1CHORFCP |
| ??? | M | M.HpyRif2ORF7965P (100% identity) | TGCA | M.HpyA1CHORFBP |
| ??? | R | HpyS299ORF6490P (100% identity) | TGCA | HpyA1CHORFBP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyS299VIP (97% identity) | GCAG | HpyA1CHORFRP |
| ??? | M | M.HpyS299VI (100% identity) | GCAG | M.HpyA1CHORFRP |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyRif2ORF7075P (100% identity) | TCAG | M.HpyA1CHORFIP |
| ??? | R | HpyS299ORF7350P (100% identity) | TCAG | HpyA1CHORFIP |
| ??? | R | HpyS299ORF6570P (100% identity) | HpyA1CHORFDP | |
| ??? | M | M.HpyRif2ORFBP (100% identity) | M.HpyA1CHORFDP | |