Escherichia coli PMV-1 |
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Putative Escherichia coli PMV-1 RM systems
Ref: Peris-Bondia,F. et al. unpublished
REBASE ref # 16585
| Sequence length: | GenBank #: | |
| Chromosome: | 4,984,940 bp | HG428755 |
| plasmid pHUSEC411like: | 98,864 bp | HG428756 |
REBASE acronym: EcoPMV1
Org_num: 11450
All begin ECOPMV1_, ECOPMV1_pHUSEC411like
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4800 | 718 aa hypothetical protein | |||
| 4802 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoPMV1ORF4803P |
| 4803 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoPMV1ORF4803P |
| 4804 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoPMV1ORF4803P |
| 4805 | EcoKMrr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 540 | 64 aa hypothetical protein | |||
| 541 | M | M.EcosE1ORFAP (100% identity) | M.EcoPMV1ORF541P | |
| 542 | pseudogene | |||
| 1238 | NinB protein | |||
| 1239 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoPMV1ORF1239P |
| 1240 | 113 aa hypothetical protein | |||
| 1410 | 65 aa hypothetical protein | |||
| 1411 | M | M.SboBSORF1444P (100% identity) | M.EcoPMV1ORF1411P | |
| 1415 | pseudogene | |||
| 2048 | inner membrane transporter yedA | |||
| 2049 | V | V.SflC32DcmP (74% identity) | V.EcoPMV1DcmP | |
| 2050 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoPMV1DcmP |
| 2051 | 231 aa hypothetical protein | |||
| 2894 | LexA repressor | |||
| 2895 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoPMV1ORF2895P |
| 2896 | PerC transcriptional activator | |||
| 3692 | Ribulose-phosphate 3-epimerase | |||
| 3693 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPMV1DamP |
| 3694 | 428 aa hypothetical protein | |||
| 4445 | PerC transcriptional activator | |||
| 4446 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoPMV1ORF4446P |
| 4447 | LexA repressor | |||
| plasmid pHUSEC411like | ||||
| 14 | 145 aa hypothetical protein | |||
| 15 | M | M.Sso866ORF27155P (64% identity) | M.EcoPMV1ORF15P | |
| 16 | 79 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2854 | 257 aa hypothetical protein | |||
| 2855 | R | EspFAAGmrSDP (100% identity) | EcoPMV1GmrSDP | |
| 2856 | DNA-invertase hin | |||
| 4799 | 306 aa hypothetical protein | |||
| 4800 | R | EcoSP15GmrSDP (100% identity) | EcoPMV1GmrSD2P | |
| 4802 | Type I restriction enzyme EcoKI specificity | |||
| 4804 | Type-1 restriction enzyme R protein | |||
| 4805 | R | EcosS1MrrP (100% identity) | EcoPMV1MrrP | |
| 4806 | GTP-binding protein YjiA | |||