Photorhabdus luminescens TTO1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Photorhabdus luminescens TTO1 RM systems
Ref: Duchaud,E. et al. Nat. Biotechnol. 21 (11), 1307-1313 (2003)
REBASE ref # 8292
Complete sequence: 5,688,987 bp
GenBank #: BX470251 (NC_005126)
REBASE acronym: PluT
Org_num: 3759
All begin plu
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4318 | integrase | |||
| 4319 | M | M.PlaTT01ORF22070P (100% identity) | GGANNNNNNRTGA | M.PluTII |
| 4320 | S | S.PlaTT01ORF22070P (100% identity) | GGANNNNNNRTGA | S.PluTII |
| 4321 | Anticodon nuclease PrrC | |||
| 4322 | R | PlaTT01ORF22070P (100% identity) | GGANNNNNNRTGA | PluTIIP |
| 4323 | transcriptional activator of maltose metabolism | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 86 | ribulose-phosphate 3-epimerase | |||
| 87 | M | M.PluHP88DamP (100% identity) | M.PluTDamP | |
| 88 | membrane protein DamX, interferes with | |||
| 232 | 120 aa hypothetical protein | |||
| 233 | RM | PluHP88ORF11360P (100% identity) | PluTORF233P | |
| 234 | Transposase TnpA, ISL3 family | |||
| 337 | 227 aa hypothetical protein plu0360 | |||
| 338 | M | M.PluHP88ORF20210P (100% identity) | CCWGG | M.PluTIV |
| 339 | V | V.PluHP88ORF20210P (100% identity) | CCWGG | V.PluTIVP |
| 340 | R | PluHP88ORF20210P (100% identity) | CCWGG | PluTIVP |
| 341 | 116 aa hypothetical protein Pecwa_4340 | |||
| 598 | 524 aa hypothetical protein plu0598 | |||
| 599 | R | PluHP88ORF4025P (100% identity) | GGCGCC | PluTI |
| 600 | M | M.PluHP88ORF4025P (100% identity) | GGCGCC | M.PluTI |
| 601 | 53 aa hypothetical protein | |||
| 1933 | YacA | |||
| 1934 | R | PluHP88ORF10770P (100% identity) | AGGCCT | PluTIIIP |
| 1935 | M | M.PluHP88ORF10770P (100% identity) | AGGCCT | M.PluTIII |
| 1936 | Flagellar biosynthetic protein FliR | |||
| 2708 | pseudogene | |||
| 2709 | R | PluHP88ORF415P (100% identity) | CTCGAG | PluTVP |
| ??? | M | M.PluHP88ORF415P (100% identity) | CTCGAG | M.PluTV |
| 2711 | invertase/recombinase protein | |||
| 2941 | 76 aa hypothetical protein | |||
| 2942 | M | M.PlaTT01ORF15115P (100% identity) | GATC | M.PluTORF2942P |
| 2943 | 79 aa hypothetical protein | |||
| 3416 | 133 aa hypothetical protein PC1_1253 | |||
| 3417 | M | M.Plu2NORF17030P (95% identity) | M.PluTORF3417P | |
| 3418 | 82 aa hypothetical protein PAU_04275 | |||
| 3448 | pseudogene | |||
| 3449 | M | M.PluHP88ORF8160P (100% identity) | M.PluTORF3449P | |
| 3450 | 145 aa conserved hypothetical protein | |||
| 3461 | bacteriophage transcriptional regulator | |||
| 3462 | M | 157 aa hypothetical protein XBJ1_1254 | M.PluTORF3462P | |
| 3463 | 66 aa hypothetical protein XNC1_3415 | |||