Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1 |
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Putative Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1 RM systems
Ref: Harhay,D.M. et al. unpublished
REBASE ref # 16307
Complete sequence: 4,915,960 bp
GenBank #: CP006631
REBASE acronym: Sen3124
Org_num: 10954
All begin SN31241_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9000 | transposase | |||
| 9010 | S | S.SenS224ORF19910P (98% identity) | GACNNNNNNNRTCC | S.Sen3124II |
| 9020 | M | M.SenS3ORF11567P (97% identity) | GACNNNNNNNRTCC | M.Sen3124II |
| 9030 | R | Spy5740IP (100% identity) | GACNNNNNNNRTCC | Sen3124IIP |
| 9040 | membrane protein | |||
| ??? | type I restriction-modification system M subunit | |||
| 9030 | R | Spy5740IP (100% identity) | Sen3124ORF9020P | |
| 9040 | membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4020 | DamX protein | |||
| 4030 | M | M.StyTDamP (100% identity) | GATC | M.Sen3124DamP |
| 4040 | Ribulose-phosphate 3-epimerase | |||
| 8670 | P4-specific DNA primase | |||
| ??? | R | SenS224ORF20045P (100% identity) | Sen3124ORF8680P | |
| 8700 | 238 aa hypothetical protein | |||
| 21140 | 82 aa hypothetical protein | |||
| ??? | M | M.SenNORF1143P (100% identity) | M.Sen3124ORF21150P | |
| 21160 | 112 aa hypothetical protein | |||
| 30880 | inner membrane transporter yedA | |||
| 30890 | V | V.StyTDcmP (100% identity) | V.Sen3124DcmP | |
| 30900 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.Sen3124DcmP |
| 30910 | protein yedJ | |||
| 38340 | Replication gene A | |||
| 38350 | M | M.SenU1590ORF19885P (100% identity) | GATC | M.Sen3124III |
| 38360 | protein ORFD in retron EC67 | |||
| 45100 | DNA-binding protein for site-specific | |||
| 45110 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen3124ORF45110P |
| 45120 | protein yhdU | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13520 | Major facilitator superfamily (MFS_1) | |||
| 13530 | M | M.SenZYXORFDP (100% identity) | CAGAG | M.Sen3124I |
| ??? | R | Ssp6947IIP (99% identity) | CAGAG | Sen3124IP |
| 13550 | 39 aa hypothetical protein | |||