Bifidobacterium longum subsp. longum 1-6B |
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Putative Bifidobacterium longum subsp. longum 1-6B RM systems
Ref: Shkoporov,A.N. et al. Genome Announc 1 (3), E00234-13 (2013)
REBASE ref # 16013
Contig set: 2,686,768 bp
GenBank #: AJTF00000000 (NZ_AJTF00000000)
REBASE acronym: Blo16B
Org_num: 10663
All begin HMPREF1313_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1925 | methionine adenosyltransferase, C-terminal | |||
| ??? | S | S1.Bbr01IIP (100% identity) | S1.Blo16BORF1928P | |
| 1926 | site-specific recombinase, phage integrase | |||
| ??? | S | S2.Blo7053ORF4135P (100% identity) | S2.Blo16BORF1928P | |
| 1927 | S | S1.Blo7053ORF4135P (100% identity) | S3.Blo16BORF1928P | |
| 1928 | M | M.BloGORF8015P (99% identity) | M.Blo16BORF1928P | |
| 1929 | R | BloGORF8015P (99% identity) | Blo16BORF1928P | |
| 1930 | type I phosphodiesterase/nucleotide | |||
| 2389 | M | type I restriction-modification system, M | M.Blo16BORF2389P | |
| 2436 | R | type I restriction/modification enzyme, subunit | Blo16BORF2436P | |
| 2437 | methionine adenosyltransferase, C-terminal | |||
| 2510 | M | 163 aa hypothetical protein | M.Blo16BORF2510P | |
| 2511 | S | 49 aa hypothetical protein | S.Blo16BORF2510P | |
| 2364 | site-specific recombinase, phage integrase | |||
| 2365 | S | S1.Blo517ORF8270P (93% identity) | S.Blo16BORF2365P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2168 | 60 aa hypothetical protein | |||
| 2169 | M | M.Blo44BORF2159P (100% identity) | M.Blo16BORF2169P | |
| 2170 | plasmid encoded RepA protein | |||
| 1412 | 145 aa hypothetical protein | |||
| 1413 | RM | Blo44BORF1778P (100% identity) | GAGGAC | Blo16BORF1413P |
| 1414 | PF12952 domain protein | |||
| 1918 | AAA-like domain protein | |||
| ??? | M | M.Ecl739ORF8635P (96% identity) | GATC | M.Blo16BORFAP |
| 1919 | DNA methylase family protein | |||
| ??? | site-specific DNA-methyltransferase | |||
| 1919 | M | M.Ecl739ORF8630P (96% identity) | CTSAG | M.Blo16BORF1919P |
| 1920 | 288 aa hypothetical protein | |||
| 1398 | 229 aa hypothetical protein | |||
| 1399 | M | M.Blo44BORF788P (100% identity) | AAGCTT | M.Blo16BORF1399P |
| 1400 | single-stranded DNA-binding protein | |||
| 81 | bacterial mobilization protein MobC domain | |||
| ??? | M | M.Bps11027ORF8990P (99% identity) | CCWGG | M.Blo16BORF82P |
| 84 | R | BloNORF1473P (100% identity) | CCWGG | Blo16BORF82P |
| 85 | bacterial mobilization protein MobC domain | |||