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Putative Desulfotignum phosphitoxidans DSM 13687 RM systems
Ref: Poehlein,A. et al. Genome Announc 1 (3), E00227-13 (2013)
REBASE ref # 15999
Contig set: 4,998,761 bp
GenBank #: APJX00000000 (NZ_APJX00000000)
REBASE acronym: Dph13687
Org_num: 10660
All begin Dpo_10c, Dpo_14c, Dpo_18c, Dpo_1c, Dpo_2c, Dpo_6c, Dpo_7c, Dpo_8c, Dpo_9c
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
590 | 74 aa hypothetical protein | |||
600 | R | GurSL11ORF4530P (96% identity) | Dph13687ORF600P | |
610 | DEAD/DEAH box helicase domain-containing | |||
620 | 47 aa hypothetical protein | |||
630 | S | S.DafPCSORF211P (38% identity) | S.Dph13687ORF600P | |
640 | 273 aa hypothetical protein | |||
650 | 344 aa hypothetical protein DUF1016 | |||
660 | M | M2.PcaI (88% identity) | M2.Dph13687ORF600P | |
670 | M | M1.GbaNRL1ORF6110P (94% identity) | M1.Dph13687ORF600P | |
680 | excisionase family protein | |||
860 | Sel1 repeat-containing protein | |||
870 | M | M.FspYFMORF41010P (73% identity) | M.Dph13687ORF870P | |
880 | S | S.VspSS3ORF1735P (68% identity) | S.Dph13687ORF870P | |
890 | R | Pfo12285IP (79% identity) | Dph13687ORF870P | |
900 | pathogenesis-like protein | |||
1270 | ubiquinone/menaquinone biosynthesis | |||
1280 | S | S.Dba7044IV (21% identity) | S.Dph13687ORF1290P | |
1290 | M | M.Dba7044IV (97% identity) | M.Dph13687ORF1290P | |
1300 | ATP-dependent DNA helicase RecG | |||
1310 | R | Dba7044IVP (99% identity) | Dph13687ORF1290P | |
1320 | nadE NH(3)-dependent NAD(+) ligase NadE | |||
2100 | ATPase | |||
2110 | M | M.TorNK122ORF20535P (75% identity) | M.Dph13687ORF2110P | |
2120 | ATP-dependent DNA helicase RecG | |||
2130 | S | S.MhoHB1ORF3702P (31% identity) | S.Dph13687ORF2110P | |
2140 | 23S rRNA-associated protein | |||
2150 | R | DvuVORF857P (62% identity) | Dph13687ORF2110P | |
2160 | NorA-like quinolone resistance protein | |||
2510 | sigma54 specific transcriptional | |||
2520 | R | DbaSRB2ORF1707P (77% identity) | Dph13687ORF2540P | |
2530 | DNA-damage-inducible protein D | |||
2540 | M | M.DbaSRB2ORF1707P (83% identity) | M.Dph13687ORF2540P | |
2550 | S | S.PspDV1ORF870P (35% identity) | S.Dph13687ORF2540P | |
2560 | 555 aa hypothetical protein | |||
4190 | 159 aa hypothetical protein | |||
??? | R | type I restriction-modification system restriction subunit | Dph13687ORF4200P | |
4220 | fumarate reductase flavoprotein subunit FrdA | |||
8750 | 264 aa hypothetical protein DUF2893 | |||
8760 | R | Dba7044IIIP (96% identity) | Dph13687ORF8780P | |
8770 | S | S.FspYFMORF41010P (56% identity) | S.Dph13687ORF8780P | |
8780 | M | M.Dba7044III (97% identity) | M.Dph13687ORF8780P | |
8790 | 392 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
210 | transcriptional regulator, TraR/DksA family | |||
220 | M | M.Dba7044ORFRP (99% identity) | CTAG | M.Dph13687ORF220P |
230 | PAS domain-containing S-box protein | |||
460 | 54 aa hypothetical protein | |||
470 | M | M.Dba7044I (97% identity) | CTGCAG | M.Dph13687ORF470P |
??? | R | DolHORF3090P (77% identity) | CTGCAG | Dph13687ORF470P |
500 | PAS/PAC sensor protein | |||
1840 | virulence protein | |||
1850 | RM | DspN47ORF23450P (56% identity) | Dph13687ORF1850P | |
1860 | ribosome biogenesis GTPase RsgA 2 | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
4150 | AAA-4 family protein | |||
4160 | R | KprFT102ORF7945P (74% identity) | Dph13687ORF4180P | |
4170 | 413 aa hypothetical protein DUF1016 | |||
4180 | M | M.TspR3ORF2045P (36% identity) | M.Dph13687ORF4180P | |
4190 | 66 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
3720 | 4Fe-4S ferredoxin iron-sulfur binding | |||
3730 | R | CspESFC1MrrP (52% identity) | Dph13687Mrr2P | |
3740 | 62 aa hypothetical protein | |||
5920 | RNA-directed DNA polymerase | |||
5930 | R | SspSGTMMrrP (65% identity) | Dph13687MrrP | |
5940 | Fic family protein |