Helicobacter pylori UM066 |
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Putative Helicobacter pylori UM066 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 16031
Complete sequence: 1,658,047 bp
GenBank #: CP005493
REBASE acronym: Hpy66
Org_num: 10628
All begin K751_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5270 | polyphosphate kinase | |||
| ??? | S | S.Hpyfe68ORF4835P (97% identity) | CAGNNNNNTC | S.Hpy66XV |
| 5260 | M | M.HpyTW03ORF2310P (97% identity) | CAGNNNNNTC | M.Hpy66XV |
| 9295 | R | HpyTW22ORF2200P (95% identity) | CAGNNNNNTC | Hpy66XVP |
| 9300 | 631 aa hypothetical protein | |||
| 4965 | membrane protein | |||
| 4960 | M | M.HpyUM023ORF5765P (97% identity) | M.Hpy66ORF4960P | |
| 4955 | S | S.HpySP15XV (63% identity) | S.Hpy66ORF4960P | |
| 4950 | DEAD/DEAH box helicase | |||
| 4625 | cadmium transporter | |||
| 4620 | S | S.HpyV005V (97% identity) | CTANNNNNNNTTC | S.Hpy66XVI |
| 4615 | membrane protein | |||
| 95 | FAD-dependent thymidylate synthase | |||
| 85 | S | S.Hpyfe19ORF7830P (98% identity) | S.Hpy66ORF85P | |
| 9725 | pseudogene | |||
| 9730 | M | M.HpyPE111ORF7360P (98% identity) | M.Hpy66ORF85P | |
| ??? | R | HpyJSHR6ORF14880P (39% identity) | Hpy66ORF85P | |
| 45 | 242 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7170 | alpha-1,2-fucosyltransferase | |||
| 7175 | M | M.HpyK93ORF6805P (98% identity) | GATC | M.Hpy66III |
| 7180 | R | HpyK029VIIP (97% identity) | GATC | Hpy66IIIP |
| 7185 | malonyl CoA-ACP transacylase | |||
| 7420 | DNA methyltransferase | |||
| 7425 | R | Hpyfe49ORF6980P (97% identity) | CCTC | Hpy66XIVP |
| 7430 | M | M2.Hpy30XIIP (98% identity) | CCTC | M2.Hpy66XIVP |
| 7435 | M | M2.Hpyfe39ORF7035P (99% identity) | CCTC | M1.Hpy66XIV |
| 7440 | non-functional type II restriction endonuclease | |||
| 7490 | peptidase S41 | |||
| 7495 | R | Hpy274ORF66P (98% identity) | GANTC | Hpy66IVP |
| 7500 | M | M.HpyT026VIII (99% identity) | GANTC | M.Hpy66IV |
| 9160 | 335 aa hypothetical protein | |||
| 7500 | DNA methylase N-4 | |||
| ??? | RM | Hpy66ORF7505P (99% identity) | Hpy66ORF8545P | |
| 7525 | nicotinate-nucleotide pyrophosphorylase | |||
| 8040 | 366 aa hypothetical protein | |||
| 8045 | M | M.HpyT027ORF7715P (100% identity) | M.Hpy66ORF8045P | |
| 8050 | Type II restriction enzyme | |||
| 8045 | DNA methyltransferase | |||
| 8050 | R | HpyPE130XIP (98% identity) | TGCA | Hpy66VIIIP |
| 8055 | M | M.HpysHP34ORF1860P (98% identity) | TGCA | M.Hpy66VIII |
| 8060 | 67 aa hypothetical protein | |||
| 6140 | exodeoxyribonuclease VII large subunit | |||
| ??? | R | Hpyfe27ORF5815P (96% identity) | CCGG | Hpy66IXP |
| 6125 | M | M.HpyTW08V (100% identity) | CCGG | M.Hpy66IX |
| 6120 | chaperone protein ClpB | |||
| 5165 | membrane protein | |||
| 5160 | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpy66VII |
| 5155 | glycosyltransferase 9 family protein | |||
| 5150 | GTP-binding protein | |||
| 5145 | M | M.HpyQ59ORFXP (99% identity) | ACNGT | M.Hpy66II |
| 5140 | R | Hpyfe89ORF5085P (98% identity) | ACNGT | Hpy66IIP |
| 5135 | DNA methyltransferase | |||
| 5140 | restriction endonuclease | |||
| 5135 | M | M.Hpyfe110ORF5235P (99% identity) | ACGT | M.Hpy66ORF5135P |
| 9330 | R | HpyUM065ORF7975P (99% identity) | ACGT | Hpy66ORF5135P |
| 5120 | catalase | |||
| 4810 | osmoprotection protein | |||
| 4800 | M | M.HpyUM111ORF8540P (100% identity) | CGWCG | M.Hpy66I |
| 4795 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | Hpy66IP |
| 4790 | osmoprotection binding protein | |||
| 4045 | glycerol-3-phosphate dehydrogenase | |||
| 4040 | RM | HpyG272ORF3895AP (73% identity) | Hpy66ORF4030CP | |
| ??? | RM | HpySG32ORF3805P (62% identity) | Hpy66ORF4030BP | |
| ??? | RM | helicase | Hpy66ORF4030AP | |
| 4025 | membrane protein | |||
| 3140 | membrane protein | |||
| ??? | R | Hpy1100ORFLP (96% identity) | GTAC | Hpy66XIIP |
| 3125 | M | M.HpyK053IX (99% identity) | GTAC | M.Hpy66XII |
| 3120 | DNA gyrase subunit B | |||
| 2905 | flagellar hook protein FlgE | |||
| 2900 | R | Hpyfe102ORF2870P (98% identity) | GTNNAC | Hpy66XIIIP |
| 2895 | M | M.HpyCA2IX (98% identity) | GTNNAC | M.Hpy66XIII |
| 2890 | ATP-dependent DNA helicase | |||
| 2235 | acetyl-CoA carboxylase | |||
| 2230 | M | M.HpyML1ORFZP (100% identity) | TCNNGA | M.Hpy66VI |
| 9585 | R | Hpyfe59ORF2060P (89% identity) | TCNNGA | Hpy66VIP |
| 2215 | Laminin subunit alpha-2 precursor | |||
| 2035 | 144 aa hypothetical protein | |||
| 2030 | M | M.HpyLIM2ORF5505P (98% identity) | GCGC | M.Hpy66ORF2030P |
| 2025 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1725 | membrane protein | |||
| 1720 | M | M.HpyFD719ORF7810P (97% identity) | TCNGA | M.Hpy66V |
| 9620 | R | restriction endonuclease | TCNGA | Hpy66VP |
| 1710 | purine nucleoside phosphorylase | |||
| 1575 | hydrolase | |||
| 1570 | M | M.HpyUM023ORF4605P (99% identity) | CATG | M.Hpy66XI |
| ??? | R | HpyJA113IP (93% identity) | CATG | Hpy66XIP |
| 1555 | serine acetyltransferase | |||
| 7500 | modification methylase BabI | |||
| ??? | RM | Hpy66ORF8545P (99% identity) | Hpy66ORF7505P | |
| 7525 | nicotinate-nucleotide pyrophosphorylase | |||
| 425 | DNA polymerase I | |||
| 420 | S | S.HpyFD719ORF8250P (55% identity) | S.Hpy66ORF415P | |
| 415 | RM | Hpyfe24ORF270P (98% identity) | Hpy66ORF415P | |
| 410 | amidophosphoribosyltransferase | |||
| 280 | permease | |||
| 275 | M | M1.HpySG08IV (99% identity) | CCATC | M1.Hpy66X |
| ??? | M | M2.HpyMA22III (99% identity) | CCATC | M2.Hpy66X |
| 9705 | R | HpyT026IVP (98% identity) | CCATC | Hpy66XP |
| 255 | membrane protein | |||
| 170 | 30 aa hypothetical protein | |||
| 165 | RM | HpyJ021ORF7065P (83% identity) | Hpy66ORF165P | |
| 160 | DEAD/DEAH box helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4790 | osmoprotection binding protein | |||
| ??? | M | M.HpyJ029ORF200P (96% identity) | M.Hpy66ORF4780P | |
| 4775 | R | HpyUM111ORF1645P (96% identity) | Hpy66ORF4780P | |
| 4770 | 145 aa hypothetical protein | |||
| 9645 | pseudogene | |||
| 795 | M | M.HpyQ59ORFRP (97% identity) | M.Hpy66ORF795P | |
| 790 | R | HpyOK13ORFDP (93% identity) | Hpy66ORF795P | |
| 785 | biotin synthase | |||
| 165 | restriction endonuclease | |||
| 160 | R | Hpyfe81ORF40P (97% identity) | Hpy66ORF150P | |
| ??? | M | M.HpyTW04ORF7140P (98% identity) | M.Hpy66ORF150P | |
| 145 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3190 | 50S ribosomal protein L9 | |||
| 3185 | R | HpyTW24GmrSDP (88% identity) | Hpy66GmrSDP | |
| 3180 | glutamine synthetase | |||