Helicobacter pylori UM037 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori UM037 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 16031
Complete sequence: 1,692,794 bp
GenBank #: CP005492
REBASE acronym: HpyUM037
Org_num: 10627
All begin K750_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6465 | integrase | |||
| ??? | S | S.HpyKH41ORFTP (97% identity) | S.HpyUM037ORF1290P | |
| 6455 | membrane protein | |||
| 8650 | 45 aa hypothetical protein | |||
| 6460 | S | S.HpyUM037ORF1290P (91% identity) | S.HpyUM037ORF6460P | |
| 8655 | 33 aa hypothetical protein | |||
| 9870 | helicase | |||
| 5000 | S | S.Hpy499ORF1545P (95% identity) | S.HpyUM037ORF5000P | |
| 4995 | CAAX protease | |||
| 4715 | hydroxyethylthiazole kinase | |||
| 4710 | R | HpyKH9ORFA1P (95% identity) | HpyUM037ORF4700P | |
| ??? | S | S.HpySW06ORF2610P (97% identity) | S.HpyUM037ORF4700P | |
| ??? | M | M.HpyK008ORF2545P (74% identity) | M.HpyUM037ORF4700P | |
| 4695 | membrane protein | |||
| 3790 | 631 aa hypothetical protein | |||
| 9990 | R | HpySP504ORF2130P (89% identity) | HpyUM037ORF3770P | |
| 3770 | M | M.HpyK117ORF2250P (87% identity) | M.HpyUM037ORF3770P | |
| 3765 | S | S.HpyLIM7XI (98% identity) | S.HpyUM037ORF3770P | |
| 3760 | polyphosphate kinase | |||
| 735 | LPP20 lipofamily protein | |||
| 730 | S | S.Hpy1846ORF950P (97% identity) | S.HpyUM037ORF715P | |
| 725 | CAAX protease | |||
| 10195 | M | M.HpyU106ORF7545P (94% identity) | M.HpyUM037ORF715P | |
| 710 | R | HpyISR7ORF7245P (27% identity) | HpyUM037ORF715P | |
| 705 | integrase | |||
| 550 | integrase | |||
| ??? | R | HpyU203ORF7570P (67% identity) | HpyUM037ORF545P | |
| 10205 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7200 | exodeoxyribonuclease VII large subunit | |||
| 9640 | M | M.Hpy13345ORF419P (89% identity) | M.HpyUM037ORF9640P | |
| 7190 | membrane protein | |||
| 7200 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | TCGA site-specific m6A methyltransferase | TCGA | M.HpyUM037ORF7195P |
| 7190 | membrane protein | |||
| 7035 | Laminin subunit alpha-2 precursor | |||
| 9650 | R | HpyK110ORF1170P (98% identity) | TCNNGA | HpyUM037ORF7015P |
| 9655 | M | M.HpyKH18ORFB1P (94% identity) | TCNNGA | M.HpyUM037ORF7015P |
| 8585 | methyltransferase | |||
| 1635 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | HpyUM037ORF1650P (71% identity) | HpyUM037ORF1640P | |
| 1655 | 36 aa hypothetical protein | |||
| 5655 | membrane protein | |||
| 5650 | RM | HpyBG3ORF3425P (90% identity) | GTGGNAG | HpyUM037X |
| 5645 | glycerol-3-phosphate dehydrogenase | |||
| 4405 | flagellar hook protein FlgE | |||
| 4400 | R | HpyNP10VIIP (98% identity) | GTNNAC | HpyUM037VP |
| 9935 | M | M.HpyNP10VII (97% identity) | GTNNAC | M.HpyUM037V |
| 4390 | ATP-dependent DNA helicase | |||
| 4010 | membrane protein | |||
| 4005 | R | HpyR08XIP (99% identity) | GTAC | HpyUM037ORF4000P |
| 4000 | adenine methyltransferase | |||
| 4005 | restriction endonuclease R.HpyAXII | |||
| 4000 | M | M.HpyKH1ORFQP (100% identity) | GTAC | M.HpyUM037XI |
| 3995 | DNA gyrase subunit B | |||
| 3890 | catalase | |||
| ??? | R | HpyKH21ORFZP (97% identity) | ACGT | HpyUM037ORF3880P |
| 3880 | M | M.HpyLI41ORF2400P (97% identity) | ACGT | M.HpyUM037ORF3880P |
| 3875 | restriction endonuclease | |||
| 3880 | DNA methyltransferase | |||
| 3875 | R | HpyPU001IIP (99% identity) | ACNGT | HpyUM037IIP |
| 3870 | M | M.HpyMM01II (98% identity) | ACNGT | M.HpyUM037II |
| 3865 | GTP-binding protein | |||
| 3860 | glycosyltransferase 9 family protein | |||
| 3855 | M | M.HpyKH20ORFZP (99% identity) | ATTAAT | M.HpyUM037VII |
| 3850 | membrane protein | |||
| 10000 | 78 aa hypothetical protein | |||
| 3330 | M | M.HpyJO10ORF3945P (99% identity) | GCNGC | M.HpyUM037ORF3330P |
| 3325 | GTP-binding protein LepA | |||
| 2890 | chaperone protein ClpB | |||
| 2885 | M | M.HpyKH8ORFSP (99% identity) | CCGG | M.HpyUM037IX |
| 2880 | R | HpyP004IVP (98% identity) | CCGG | HpyUM037IXP |
| 10035 | 69 aa hypothetical protein | |||
| 10035 | 69 aa hypothetical protein | |||
| ??? | M | 217 aa hypothetical protein | TCGA | M.HpyUM037ORF2870P |
| 2865 | Sel1 repeat protein | |||
| 2845 | 144 aa hypothetical protein | |||
| 2840 | M | M.HpyPU009ORF5295P (97% identity) | GCGC | M.HpyUM037ORF2840P |
| 2835 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2405 | hydrolase | |||
| 2400 | M | M.HpyNP10I (98% identity) | CATG | M.HpyUM037I |
| 2395 | 59 aa hypothetical protein | |||
| 1685 | peptidase S41 | |||
| 1680 | R | HpySP509VIIP (97% identity) | GANTC | HpyUM037IVP |
| 1675 | M | M.HpySP210VI (99% identity) | GANTC | M.HpyUM037IV |
| 8925 | 174 aa hypothetical protein | |||
| 1675 | DNA methyltransferase | |||
| ??? | RM | Hpy5016ORF3690P (85% identity) | HpyUM037ORF1650P | |
| 1635 | nicotinate-nucleotide pyrophosphorylase | |||
| 1675 | DNA methyltransferase | |||
| 10110 | RM | HpyKH33ORFRP (20% identity) | HpyUM037ORF10110P | |
| 1650 | pseudogene | |||
| 1105 | DEAD/DEAH box helicase | |||
| 1100 | RM | HpyKH28ORFUP (69% identity) | HpyUM037ORF1100P | |
| 1095 | 179 aa hypothetical protein | |||
| 995 | membrane protein | |||
| 990 | R | HpyFD662ORF310P (97% identity) | CCATC | HpyUM037VIP |
| ??? | M | M2.HpyUM023ORF1405P (100% identity) | CCATC | M2.HpyUM037VI |
| 980 | M | M1.HpyGE9III (99% identity) | CCATC | M1.HpyUM037VI |
| 975 | permease | |||
| 840 | amidophosphoribosyltransferase | |||
| 835 | RM | HpyUM084ORF1905P (96% identity) | HpyUM037ORF835P | |
| 830 | S | S.HpyP009ORF7325P (94% identity) | S.HpyUM037ORF835P | |
| 825 | DNA polymerase I | |||
| 465 | 67 aa hypothetical protein | |||
| 460 | M | M.HpyI004V (98% identity) | TGCA | M.HpyUM037VIII |
| 455 | R | HpyKH36ORFFP (100% identity) | TGCA | HpyUM037VIIIP |
| 450 | elongation factor Ts | |||
| 9165 | agmatine deiminase | |||
| 9170 | M | M1.HpyKH21ORFNP (99% identity) | CCTC | M1.HpyUM037ORF8305P |
| ??? | M | M1.HpyKH21ORFNP (49% identity) | CCTC | M2.HpyUM037ORF8305P |
| ??? | R | 99 aa hypothetical protein | CCTC | HpyUM037ORF8305P |
| ??? | 325 aa hypothetical protein | |||
| ??? | 99 aa hypothetical protein | |||
| ??? | R | HpyKH26ORFRP (99% identity) | CCTTC | HpyUM037ORF8285P |
| 9185 | M | M.HpyKH20ORFLP (100% identity) | CCTTC | M.HpyUM037ORF8285P |
| 9190 | proline:sodium symporter PutP | |||
| 10290 | pseudogene | |||
| 9405 | M | M.HpyLI30X (97% identity) | GATC | M.HpyUM037III |
| 10295 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1575 | chemotaxis protein CheY | |||
| 1570 | M | M.HpyT001XVII (95% identity) | GGCAA | M.HpyUM037XII |
| ??? | R | HpyKH27ORFWP (84% identity) | GGCAA | HpyUM037XIIP |
| 1555 | rod shape-determining protein MreC | |||
| 1500 | endonuclease | |||
| ??? | M | M.HpyI009ORF7025P (83% identity) | M.HpyUM037ORF1490P | |
| 1485 | R | HpyBGR5ORF6970P (93% identity) | HpyUM037ORF1490P | |
| 1480 | biotin synthase | |||
| 1115 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyME41ORF7315P (95% identity) | M.HpyUM037ORF8995P | |
| 1105 | R | HpyGRE043ORF7300P (95% identity) | HpyUM037ORF8995P | |
| 1100 | restriction endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4225 | glutamine synthetase | |||
| 9955 | R | HpyU120GmrSDP (83% identity) | HpyUM037GmrSDP | |
| 4210 | 50S ribosomal protein L9 | |||