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Putative Helicobacter pylori UM299 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 16472
Complete sequence: 1,594,569 bp
GenBank #: CP005491
REBASE acronym: Hpy299
Org_num: 10626
All begin K749_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3100 | hydroxyethylthiazole kinase | |||
9010 | R | HpyUM032ORF11175P (100% identity) | Hpy299ORF3120P | |
3115 | S | S.HpyUM032ORF11175P (100% identity) | S.Hpy299ORF3120P | |
3120 | M | M.HpyUM032ORF11175P (100% identity) | M.Hpy299ORF3120P | |
3125 | membrane protein | |||
3415 | 631 aa hypothetical protein | |||
??? | R | HpyUM032XVIP (100% identity) | CCANNNNNNTC | Hpy299ORF3435P |
3435 | M | M.HpyUM032XVI (100% identity) | CCANNNNNNTC | M.Hpy299ORF3435P |
3440 | S | S.HpyUM032XVI (100% identity) | CCANNNNNNTC | S.Hpy299ORF3435P |
3445 | polyphosphate kinase | |||
6260 | type I restriction enzyme R protein HsdR | |||
9160 | R | HpyUM032XIIP (100% identity) | CRTANNNNNNNTC | Hpy299XIIIP |
6270 | M | M.HpyUM032XII (100% identity) | CRTANNNNNNNTC | M.Hpy299XIII |
6275 | S | S.HpyUM032XII (100% identity) | CRTANNNNNNNTC | S.Hpy299XIII |
6290 | FAD-dependent thymidylate synthase | |||
2790 | 60 aa hypothetical protein | |||
??? | S | S.HpyUM032ORF8175P (100% identity) | S.Hpy299ORF2795P | |
2800 | cadmium transporter | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
8290 | 61 aa hypothetical protein | |||
3290 | R | HpyUM032ORF11004P (100% identity) | ACGT | Hpy299ORF3295P |
3295 | M | M.HpyUM032ORF11004P (100% identity) | ACGT | M.Hpy299ORF3295P |
3300 | restriction endonuclease | |||
3295 | DNA methyltransferase | |||
3300 | R | HpyUM032IIP (100% identity) | ACNGT | Hpy299IIP |
3305 | M | M.HpyUM032II (100% identity) | ACNGT | M.Hpy299II |
3310 | GTP-binding protein | |||
3315 | glycosyltransferase 9 family protein | |||
3320 | M | M.HpyUM032VII (100% identity) | ATTAAT | M.Hpy299VII |
3325 | membrane protein | |||
4335 | chaperone protein ClpB | |||
4340 | M | M.HpyUM032IX (100% identity) | CCGG | M.Hpy299IX |
4345 | R | HpyUM032IXP (100% identity) | CCGG | Hpy299IX |
4350 | 204 aa hypothetical protein | |||
4350 | 204 aa hypothetical protein | |||
4355 | M | M.Hpyfe35ORF5885P (100% identity) | TCGA | M.Hpy299XI |
4360 | exodeoxyribonuclease VII large subunit | |||
5090 | malonyl CoA-ACP transacylase | |||
5095 | R | HpyUM032IIIP (100% identity) | GATC | Hpy299IIIP |
5100 | M | M.HpyUM032III (100% identity) | GATC | M.Hpy299III |
8865 | alpha-1,2-fucosyltransferase | |||
5510 | proline:sodium symporter PutP | |||
5515 | M | M2.HpyUM032VIP (100% identity) | CCTC | M2.Hpy299VIP |
5520 | M | M1.HpyUM032VI (100% identity) | CCTC | M1.Hpy299VI |
5525 | non-functional type II restriction endonuclease | |||
5570 | DNA methyltransferase | |||
5575 | RM | HpyUM032IVP (100% identity) | GANTC | Hpy299IVP |
5580 | M | M.HpyUM032IV (100% identity) | GANTC | M.Hpy299IV |
??? | DNA methyltransferase | |||
5580 | DNA methyltransferase | |||
??? | RM | HpyUM032ORF8785P (100% identity) | Hpy299ORF5595BP | |
5595 | RM | HpyUM032ORF8780P (100% identity) | Hpy299ORF5595AP | |
5600 | nicotinate-nucleotide pyrophosphorylase | |||
9140 | 107 aa hypothetical protein | |||
6125 | R | HpyUM032VIIIP (100% identity) | TGCA | Hpy299VIIIP |
6130 | M | M.HpyUM032VIII (100% identity) | TGCA | M.Hpy299VIII |
6135 | 67 aa hypothetical protein | |||
6350 | DEAD/DEAH box helicase | |||
??? | RM | Hpy298ORF4750P (100% identity) | Hpy299ORF6360P | |
6365 | transcription elongation factor NusA | |||
6435 | membrane protein | |||
9170 | R | HpyUM032XP (100% identity) | CCATC | Hpy299XP |
??? | M | M2.HpyUM032XP (100% identity) | CCATC | M2.Hpy299X |
6455 | M | M1.HpyUM032X (100% identity) | CCATC | M1.Hpy299X |
6460 | permease | |||
6585 | amidophosphoribosyltransferase | |||
6590 | RM | HpyUM032XIII-mut1 (100% identity) | CYANNNNNNNTRG | Hpy299XII |
8740 | S | S.HpyUM032XIII-mut1 (52% identity) | CYANNNNNNNTRG | S1.Hpy299XII |
8735 | S | S2.HpyUM032XIII (100% identity) | CYANNNNNNNTRG | S2.Hpy299XII |
6600 | DNA polymerase I | |||
7730 | serine acetyltransferase | |||
7735 | R | HpyUM032IP (100% identity) | CATG | Hpy299IP |
7740 | M | M.HpyUM032I (100% identity) | CATG | M.Hpy299I |
7745 | hydrolase | |||
7890 | purine nucleoside phosphorylase | |||
7895 | R | HpyUM032VP (100% identity) | TCNGA | Hpy299VP |
7900 | M | M.HpyUM032V (100% identity) | TCNGA | M.Hpy299V |
8625 | 76 aa hypothetical protein | |||
110 | flagellar biosynthesis anti-sigma factor FlgM | |||
??? | M | M.HpyJ013XI (99% identity) | GCGC | M.Hpy299ORF115P |
120 | 144 aa hypothetical protein | |||
300 | Laminin subunit alpha-2 precursor | |||
305 | R | HpyUM032ORF5620P (100% identity) | TCNNGA | Hpy299ORF310P |
9255 | M | M.HpyUM032ORF5620P (100% identity) | TCNNGA | M.Hpy299ORF310P |
315 | acetyl-CoA carboxylase | |||
5660 | adenine-specific DNA methylase | |||
5665 | M | adenine-specific DNA methylase | M.Hpy299ORF5665P | |
5670 | Type III restriction enzyme R protein | |||
1020 | ATP-dependent DNA helicase | |||
1025 | M | M.HpyUM032XI (100% identity) | GTNNAC | M.Hpy299ORF1025P |
1030 | R | HpyUM032XIP (100% identity) | GTNNAC | Hpy299ORF1025P |
1035 | flagellar hook protein FlgE | |||
1215 | DNA gyrase subunit B | |||
??? | M | M.Hpy298ORF7830P (100% identity) | GTAC | M.Hpy299ORF1220P |
1225 | R | HpyUM032ORF6575P (100% identity) | GTAC | Hpy299ORF1220P |
1230 | membrane protein | |||
2065 | glycerol-3-phosphate dehydrogenase | |||
??? | RM | HpyUM032ORF7440AP (100% identity) | Hpy299ORF2070AP | |
2075 | RM | HpyUM032ORF7440BP (100% identity) | Hpy299ORF2070BP | |
2080 | membrane protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
5650 | chemotaxis protein CheY | |||
??? | M | M.HpyUM032ORF8715P (100% identity) | M.Hpy299ORF5660P | |
5670 | R | HpyUM032ORF8715P (100% identity) | Hpy299ORF5660P | |
5675 | rod shape-determining protein MreC | |||
6335 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyUM032ORF3575P (100% identity) | M.Hpy299ORF6340P | |
6350 | R | HpyUM032ORF3575P (100% identity) | Hpy299ORF6340P | |
6360 | pseudogene | |||
6935 | biotin synthase | |||
??? | R | Hpy298ORF5365P (100% identity) | Hpy299ORF6945P | |
6945 | M | M.HpyUM032ORF4185P (100% identity) | M.Hpy299ORF6945P | |
6960 | citrate synthase |