Helicobacter pylori UM032 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori UM032 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 17630
Complete sequence: 1,593,537 bp
GenBank #: CP005490 (NC_021215)
REBASE acronym: HpyUM032
Org_num: 10625
All begin K747_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11195 | hydroxyethylthiazole kinase | |||
| 12090 | R | Hpy299ORF3120P (100% identity) | GANNNNNNTGG | HpyUM032ORF11175P |
| 11180 | S | S.Hpy299ORF3120P (100% identity) | GANNNNNNTGG | S.HpyUM032ORF11175P |
| 11175 | M | M.Hpy299ORF3120P (100% identity) | GANNNNNNTGG | M.HpyUM032ORF11175P |
| 11170 | membrane protein | |||
| 10920 | 631 aa hypothetical protein | |||
| ??? | R | Hpy299ORF3435P (100% identity) | CCANNNNNNTC | HpyUM032XVIP |
| 10905 | M | M.Hpy299ORF3435P (100% identity) | CCANNNNNNTC | M.HpyUM032XVI |
| 12155 | S | S.Hpy299ORF3435P (100% identity) | CCANNNNNNTC | S.HpyUM032XVI |
| 10890 | polyphosphate kinase | |||
| 12610 | type I restriction enzyme R protein HsdR | |||
| 12615 | R | Hpy299XIIIP (100% identity) | CRTANNNNNNNTC | HpyUM032XIIP |
| 3505 | M | M.Hpy299XIII (100% identity) | CRTANNNNNNNTC | M.HpyUM032XII |
| 3510 | S | S.Hpy299XIII (100% identity) | CRTANNNNNNNTC | S.HpyUM032XII |
| 3525 | FAD-dependent thymidylate synthase | |||
| 8170 | 60 aa hypothetical protein | |||
| ??? | S | S.Hpy299ORF2795P (100% identity) | CRTANNNNNNNTC | S.HpyUM032ORF8175P |
| 12020 | cadmium transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12115 | 61 aa hypothetical protein | |||
| 11005 | R | Hpy299ORF3295P (100% identity) | ACGT | HpyUM032ORF11004P |
| 12120 | M | M.Hpy299ORF3295P (100% identity) | ACGT | M.HpyUM032ORF11004P |
| 11000 | restriction endonuclease | |||
| 12120 | DNA methyltransferase | |||
| 11000 | R | Hpy299IIP (100% identity) | ACNGT | HpyUM032IIP |
| 10995 | M | M.Hpy299II (100% identity) | ACNGT | M.HpyUM032II |
| 10990 | GTP-binding protein | |||
| 12125 | glycosyltransferase 9 family protein | |||
| 10980 | M | M.Hpy299VII (100% identity) | ATTAAT | M.HpyUM032VII |
| 10975 | membrane protein | |||
| 10005 | chaperone protein ClpB | |||
| 10000 | M | M.Hpy299IX (100% identity) | CCGG | M.HpyUM032IX |
| 9995 | R | Hpy299IX (100% identity) | CCGG | HpyUM032IXP |
| 9990 | 204 aa hypothetical protein | |||
| 9990 | 204 aa hypothetical protein | |||
| ??? | M | M.Hpy298ORF2775P (100% identity) | TCGA | M.HpyUM032XVII |
| 9980 | exodeoxyribonuclease VII large subunit | |||
| 9255 | malonyl CoA-ACP transacylase | |||
| 12400 | R | Hpy299IIIP (100% identity) | GATC | HpyUM032IIIP |
| 9245 | M | M.Hpy299III (100% identity) | GATC | M.HpyUM032III |
| 9240 | alpha-1,2-fucosyltransferase | |||
| 8860 | proline:sodium symporter PutP | |||
| 8855 | M | M2.Hpy299VIP (100% identity) | CCTC | M2.HpyUM032VIP |
| 8850 | M | M1.Hpy299VI (100% identity) | CCTC | M1.HpyUM032VI |
| 8845 | non-functional type II restriction endonuclease | |||
| 8800 | DNA methyltransferase | |||
| 12485 | R | Hpy299IVP (100% identity) | GANTC | HpyUM032IVP |
| 12490 | M | M.Hpy299IV (100% identity) | GANTC | M.HpyUM032IV |
| ??? | DNA methyltransferase | |||
| 12490 | DNA methyltransferase | |||
| ??? | RM | Hpy299ORF5595BP (100% identity) | HpyUM032ORF8785P | |
| 8780 | DNA methyltransferase | |||
| ??? | DNA methyltransferase | |||
| 8780 | RM | Hpy299ORF5595AP (100% identity) | HpyUM032ORF8780P | |
| 8775 | nicotinate-nucleotide pyrophosphorylase | |||
| 2910 | adenine-specific DNA methylase | |||
| 2915 | M | adenine-specific DNA methylase | M.HpyUM032ORF2915P | |
| 2920 | Type III restriction enzyme R protein | |||
| 12585 | 107 aa hypothetical protein | |||
| 3370 | R | Hpy299VIIIP (100% identity) | TGCA | HpyUM032VIIIP |
| 3375 | M | M.Hpy299VIII (100% identity) | TGCA | M.HpyUM032VIII |
| 3380 | 67 aa hypothetical protein | |||
| 12635 | DEAD/DEAH box helicase | |||
| ??? | RM | Hpy299ORF6360P (96% identity) | GAAAG | HpyUM032XIV |
| 3600 | transcription elongation factor NusA | |||
| 3670 | membrane protein | |||
| 12645 | R | Hpy299XP (100% identity) | CCATC | HpyUM032XP |
| ??? | M | M2.Hpy299X (100% identity) | CCATC | M2.HpyUM032XP |
| 3690 | M | M1.Hpy299X (100% identity) | CCATC | M1.HpyUM032X |
| 3695 | permease | |||
| 3820 | amidophosphoribosyltransferase | |||
| 3825 | RM | HpyUM032XIII-mut1 (100% identity) | CYANNNNNNNTRG | HpyUM032XIII |
| 11950 | S | S.HpyUM032XIII-mut1 (52% identity) | S1.HpyUM032XIIIP | |
| 11945 | S | S2.Hpy299XII (100% identity) | CYANNNNNNNTRG | S2.HpyUM032XIII |
| 3835 | DNA polymerase I | |||
| 4970 | serine acetyltransferase | |||
| 4975 | R | Hpy299IP (100% identity) | CATG | HpyUM032IP |
| 4980 | M | M.Hpy299I (100% identity) | CATG | M.HpyUM032I |
| 4985 | hydrolase | |||
| 5130 | purine nucleoside phosphorylase | |||
| 5135 | R | HpyU425XP (100% identity) | TCNGA | HpyUM032VP |
| 5140 | M | M.HpyU425X (100% identity) | TCNGA | M.HpyUM032V |
| 11835 | 76 aa hypothetical protein | |||
| 5425 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5430 | M | M.Hpy299ORF115P (98% identity) | GCGC | M.HpyUM032XV |
| 5435 | 144 aa hypothetical protein | |||
| 5610 | Laminin subunit alpha-2 precursor | |||
| 5615 | R | Hpy299ORF310P (100% identity) | TCNNGA | HpyUM032ORF5620P |
| 12885 | M | M.HpyMA15III (96% identity) | TCNNGA | M.HpyUM032ORF5620P |
| 5625 | acetyl-CoA carboxylase | |||
| 6365 | ATP-dependent DNA helicase | |||
| 6370 | M | M.Hpy299ORF1025P (100% identity) | GTNNAC | M.HpyUM032XI |
| 6375 | R | Hpy299ORF1025P (100% identity) | GTNNAC | HpyUM032XIP |
| 6380 | flagellar hook protein FlgE | |||
| 6570 | DNA gyrase subunit B | |||
| 6575 | M | M.Hpy299ORF1220P (95% identity) | GTAC | M.HpyUM032ORF6575P |
| 6580 | R | Hpy299ORF1220P (100% identity) | GTAC | HpyUM032ORF6575P |
| 6585 | membrane protein | |||
| 13210 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | Hpy299ORF2070AP (100% identity) | HpyUM032ORF7440AP | |
| 7445 | RM | Hpy299ORF2070BP (100% identity) | HpyUM032ORF7440BP | |
| 11575 | membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8725 | chemotaxis protein CheY | |||
| ??? | M | M.Hpy299ORF5660P (100% identity) | M.HpyUM032ORF8715P | |
| 12505 | R | Hpy299ORF5660P (100% identity) | HpyUM032ORF8715P | |
| 8705 | rod shape-determining protein MreC | |||
| 2905 | type III restriction enzyme M protein | |||
| 2910 | M | M.HpyUM032ORF8715P (56% identity) | M.HpyUM032ORF2905P | |
| 2915 | adenine-specific DNA methylase | |||
| 3570 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy299ORF6340P (100% identity) | M.HpyUM032ORF3575P | |
| 12635 | R | Hpy299ORF6340P (100% identity) | HpyUM032ORF3575P | |
| 3595 | pseudogene | |||
| 4175 | biotin synthase | |||
| ??? | R | Hpy299ORF6945P (98% identity) | HpyUM032ORF4185P | |
| 4185 | M | M.Hpy299ORF6945P (100% identity) | M.HpyUM032ORF4185P | |
| 4200 | citrate synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6620 | glutamine synthetase | |||
| 6625 | R | HpySG19GmrSDP (90% identity) | HpyUM032GmrSDP | |
| 6630 | 50S ribosomal protein L9 | |||