Escherichia coli EC4436 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli EC4436 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,415,441 bp
GenBank #: AKMK00000000 (NZ_AKMK00000000)
REBASE acronym: Eco4436
Org_num: 10480
All begin ECEC4436_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5626 | endoribonuclease symE | |||
| 5627 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco4436ORF5628P |
| 5628 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco4436ORF5628P |
| 5629 | R | EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | Eco4436ORF5628P |
| 5630 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1835 | 65 aa hypothetical protein | |||
| ??? | M | M.EcosPA8ORF27255P (100% identity) | M.Eco4436ORF1386P | |
| 5749 | 41 aa hypothetical protein | |||
| 5750 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco4436ORF5750P | |
| 5751 | 73 aa hypothetical protein | |||
| 3390 | regulatory protein | |||
| 3391 | M | M.EspP079ORF2847P (100% identity) | GATC | M.Eco4436ORF3391P |
| 3392 | 70 aa hypothetical protein | |||
| 3362 | prophage repressor CI | |||
| 3363 | M | M.Sso1099I (100% identity) | CTGCAG | M.Eco4436ORF3363P |
| 3364 | R | Sso1099IP (100% identity) | CTGCAG | Eco4436ORF3363P |
| 3365 | 37 aa hypothetical protein | |||
| 2740 | 306 aa hypothetical protein | |||
| 2741 | V | V.EcosPA8DcmP (100% identity) | V.Eco4436DcmP | |
| 2742 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco4436DcmP |
| 2743 | 231 aa hypothetical protein | |||
| 5575 | ATP-dependent helicase | |||
| 5576 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco4436ORF5576P |
| 4476 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4436Dam2P |
| 4478 | protein damX | |||
| 4476 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4436DamP |
| 4478 | protein damX | |||
| 5312 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco4436ORF5313P | |
| 5315 | 109 aa hypothetical protein | |||
| 4370 | DNA-binding protein fis | |||
| 4371 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco4436ORF4371P |
| 4372 | 59 aa hypothetical protein | |||