Escherichia coli EC1738 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli EC1738 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,478,162 bp
GenBank #: AKMN00000000 (NZ_AKMN00000000)
REBASE acronym: Eco1738
Org_num: 10413
All begin ECEC1738_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3138 | 58 aa hypothetical protein | |||
| 3139 | M | M.Ecos1613ORF5225P (100% identity) | M.Eco1738ORF3139P | |
| 3140 | S | S.Ecos1613ORF5225P (100% identity) | S.Eco1738ORF3139P | |
| 3141 | 218 aa hypothetical protein | |||
| 3142 | 355 aa hypothetical protein | |||
| 3143 | R | EcoRC1ORF26055P (100% identity) | Eco1738ORF3139P | |
| 3144 | metal-dependent hydrolase | |||
| 136 | endoribonuclease symE | |||
| 137 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco1738ORF138P |
| 138 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco1738ORF138P |
| 139 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco1738ORF138P |
| 140 | 87 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1912 | lipoprotein | |||
| 1913 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco1738ORF1913P | |
| 1916 | 209 aa hypothetical protein | |||
| 2979 | anti-termination protein | |||
| 2980 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco1738ORF2980P |
| 2981 | ninB protein | |||
| 1292 | 73 aa hypothetical protein | |||
| 1293 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco1738ORF1293P | |
| 1294 | 41 aa hypothetical protein | |||
| 5254 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco1738ORFAP | |
| 5257 | 109 aa hypothetical protein | |||
| 4551 | ribulose-phosphate 3-epimerase | |||
| 4552 | M | M.Eco2002DDamP (100% identity) | GATC | M.Eco1738DamP |
| 4553 | protein damX | |||
| 498 | 83 aa hypothetical protein | |||
| 499 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.Eco1738ORF499P |
| 500 | lexA DNA binding domain protein | |||
| 85 | ATP-dependent helicase | |||
| 86 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco1738ORF86P |
| 4438 | DNA-binding protein fis | |||
| 4439 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco1738ORF4439P |
| 4440 | 37 aa hypothetical protein | |||
| 2816 | 306 aa hypothetical protein | |||
| 2817 | V | V.EcosPA8DcmP (100% identity) | V.Eco1738DcmP | |
| 2818 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1738DcmP |
| 2819 | 231 aa hypothetical protein | |||