Holophaga foetida DSM 6591 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Holophaga foetida DSM 6591 RM systems
Ref: Anderson,I. et al. Stand Genomic Sci 6 (2), 174-184 (2012)
REBASE ref # 15702
Contig set: 4,123,637 bp
GenBank #: AGSB00000000 (NZ_AGSB00000000)
REBASE acronym: Hfo6591
Org_num: 8344
All begin HolfoDRAFT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Rsp2GORF17780P (68% identity) | GTANNNNNNNTTCC | M.Hfo6591III |
| ??? | S | S.Ski73ORF13540P (39% identity) | GTANNNNNNNTTCC | S.Hfo6591III |
| ??? | R | PspHIN9ORF5700P (48% identity) | GTANNNNNNNTTCC | Hfo6591IIIP |
| 1563 | 345 aa hypothetical protein | |||
| 1564 | R | PkhODT83ORF23385P (68% identity) | AACNNNNNNGTCC | Hfo6591IIP |
| 1565 | 115 aa hypothetical protein | |||
| 1566 | 253 aa hypothetical protein | |||
| 1567 | S | S.Ran24876ORF14315P (54% identity) | AACNNNNNNGTCC | S.Hfo6591II |
| 1568 | 344 aa hypothetical protein | |||
| 1569 | M | M.PglR39ORFGP (66% identity) | AACNNNNNNGTCC | M.Hfo6591II |
| 1570 | 125 aa hypothetical protein | |||
| ??? | M | M.PglR39ORFGP (66% identity) | AACNNNNNNGTCC | M.Hfo6591II |
| ??? | S | S.Ran24876ORF14315P (54% identity) | AACNNNNNNGTCC | S.Hfo6591II |
| ??? | R | PkhODT83ORF23385P (68% identity) | AACNNNNNNGTCC | Hfo6591IIP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3465 | 326 aa hypothetical protein | |||
| 3466 | RM | Ssp1108ORF16400P (47% identity) | Hfo6591ORF3466P | |
| 3467 | AAA-4 family protein | |||
| 3328 | transposase IS66 | |||
| 3329 | RM | TspCOM3ORF63970P (42% identity) | Hfo6591ORF3329P | |
| 3330 | DNA topoisomerase type IA zn finger domain | |||
| ??? | RM | TspCOM3ORF63970P (42% identity) | Hfo6591ORF3329P | |
| ??? | RM | Ssp1108ORF16400P (47% identity) | Hfo6591ORF3466P | |
| ??? | M | M.TtoToBEORF1359P (46% identity) | RCCGGY | M.Hfo6591ORF2068P |
| ??? | M | Pba412ORF3252P (19% identity) | M.Hfo6591ORF1609P | |
| ??? | M | M.TbaSKG1ORF850P (56% identity) | GTAC | M.Hfo6591I |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Tte43061ORF7580P (53% identity) | M.Hfo6591ORF1622P | |
| 1621 | type III restriction-modification enzyme, | |||
| 1622 | M | M.Tte43061ORF7580P (53% identity) | M.Hfo6591ORF1622P | |
| 1623 | helix-turn-helix domain protein | |||
| ??? | M | 274 aa hypothetical protein, partial | M.Hfo6591ORF247AP | |
| ??? | M | 408 aa hypothetical protein | M.Hfo6591ORF247BP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.GspS4ORFCP (40% identity) | M.Hfo6591ORF1840P | |