Mannheimia haemolytica USDA-ARS-USMARC-185 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Mannheimia haemolytica USDA-ARS-USMARC-185 RM systems
Ref: Harhay,G.P. et al. unpublished
REBASE ref # 16015
Complete sequence: 2,544,094 bp
GenBank #: CP004753
REBASE acronym: Mha185
Org_num: 10345
All begin D648_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22050 | bifunctional glutamate--cysteine | |||
| 22040 | S | S1.MhaGHORF4030P (100% identity) | S2.Mha185VIP | |
| 22030 | integrase | |||
| 22020 | S | S2.MhaPORFGP (100% identity) | GNGAYNNNNNNNNTGT | S1.Mha185VI |
| 22000 | transcriptional regulator | |||
| 21990 | M | M.Pba12565ORF1955P (100% identity) | GNGAYNNNNNNNNTGT | M.Mha185VI |
| 21980 | R | Pba12565ORF1955P (100% identity) | GNGAYNNNNNNNNTGT | Mha185VIP |
| 21970 | phosphatidylserine decarboxylase | |||
| 16000 | bifunctional [glutamate--ammonia | |||
| 15990 | R | Mhas183ORF4955P (100% identity) | GACNNNNNTTC | Mha185ORF15970P |
| 15980 | S | S.PhaAI (100% identity) | GACNNNNNTTC | S.Mha185ORF15970P |
| 15970 | M | M.Mha5106ORF3625P (100% identity) | GACNNNNNTTC | M.Mha185ORF15970P |
| 15960 | 125 aa hypothetical protein | |||
| 6110 | 211 aa hypothetical protein | |||
| 6100 | S | S2.Mhas184ORF2820P (100% identity) | S2.Mha185VP | |
| 6090 | S | S.Pba12565ORF10250P (100% identity) | CAACNNNNGT | S1.Mha185V |
| 6080 | M | M.Pba12565ORF10250P (100% identity) | CAACNNNNGT | M.Mha185V |
| 6070 | methionine synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19560 | RNase adaptor protein RapZ | |||
| 19550 | M | M.Pba12565ORF10370P (100% identity) | BA | M.Mha185ORF19550P |
| 25770 | adhesin | |||
| 18590 | 3-dehydroquinate synthase | |||
| 18580 | M | M.Pba12565ORF3610P (100% identity) | GATC | M.Mha185I |
| 18570 | sodium-dependent transporter | |||
| 16880 | DUF968 domain-containing protein | |||
| 16860 | M | M.Pba12565ORF4290P (98% identity) | GATC | M.Mha185ORF16860P |
| 16850 | 348 aa hypothetical protein | |||
| 26200 | protein-transmembrane prediction | |||
| 9300 | R | Pba12565ORF8745P (100% identity) | GCATC | Mha185IIP |
| 9290 | M | M.Pba12565ORF8745P (100% identity) | GCATC | M.Mha185II |
| 26205 | 69 aa hypothetical protein | |||
| 2780 | 188 aa hypothetical protein | |||
| 2770 | M | M.Pba12565ORF12115P (100% identity) | CTGAAG | M.Mha185ORF2760P |
| ??? | Eco57IR-like type IIS restriction enzyme | |||
| 2770 | SAM-dependent methyltransferase | |||
| ??? | RM | MhaPORFCP (100% identity) | CTGAAG | Mha185III |
| 2750 | helicase IV | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25950 | adenine methyltransferase | |||
| 15400 | M | M.Pba12565ORF6755P (100% identity) | GTTAAT | M.Mha185IV |
| 15390 | R | Pba12565ORF6755P (100% identity) | GTTAAT | Mha185IVP |
| 15380 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 13230 | trimethylamine-N-oxide reductase TorA | |||
| ??? | M | M.Pba12565ORF5515P (100% identity) | M.Mha185ORF13210P | |
| 26040 | R | Pba12565ORF5515P (100% identity) | Mha185ORF13210P | |
| 13170 | citrate synthase | |||