Pseudomonas putida GB-1 |
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Putative Pseudomonas putida GB-1 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 10483
| Sequence length: | GenBank #: | |
| Chromosome: | 6,078,430 bp | CP000926 (NC_010322) |
| Chromosome: | 6,053,195 bp | AAXR00000000 (NZ_AAXR00000000) |
REBASE acronym: PpuGB
Org_num: 4986
All begin PputGB1_, PputGB1DRAFT_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 525 | 448 aa conserved hypothetical protein | |||
| 526 | M | M.Paes37ORF30595P (91% identity) | M.PpuGBORF526P | |
| 527 | 573 aa hypothetical protein | |||
| 528 | V | V.PaeRN21ORF739P (78% identity) | V.PpuGBORF526P | |
| 529 | 233 aa conserved hypothetical protein | |||
| 1184 | 66 aa hypothetical protein | |||
| 1185 | M | M.Pso5ORF6295P (94% identity) | M.PpuGBORF1185P | |
| 1186 | 165 aa hypothetical protein | |||
| 1220 | phage protein, putative | |||
| 1221 | M | M.PpuS1312ORF13915P (79% identity) | M.PpuGBORF1221P | |
| 1222 | 92 aa conserved hypothetical protein | |||
| 1716 | 232 aa hypothetical protein | |||
| 1717 | M | M.Ppu102ORF16375P (20% identity) | M.PpuGBORF1717BP | |
| 1718 | IS66 Orf2 family protein | |||
| 1719 | transposase IS66 | |||
| 1720 | M | M.CmeDORF41930P (74% identity) | M.PpuGBORF1717AP | |
| 1721 | Exonuclease RNase T and DNA polymerase III | |||
| 3460 | 362 aa hypothetical protein | |||
| 3461 | M | M.PspAp32ORF23280P (93% identity) | M.PpuGBORF3461P | |
| 3462 | 150 aa hypothetical protein | |||
| 4745 | DNA repair protein RadC | |||
| 4746 | R | PspAN1ORF13220P (81% identity) | CCWGG | PpuGBORF4748P |
| 4747 | V | V.FkuAn22ORF3800P (52% identity) | V.PpuGBORF4748P | |
| 4748 | M | M.FkuAn22ORF3800P (68% identity) | CCWGG | M.PpuGBORF4748P |
| 4749 | transposase-like protein TnpA3 | |||
| Chromosome | ||||
| 1156 | transposase family protein | |||
| 1157 | M | M.FkuAn22ORF3800P (68% identity) | CCWGG | M.PpuGBORF4748P |
| 1158 | V | V.FkuAn22ORF3800P (52% identity) | V.PpuGBORF4748P | |
| 1221 | R | PspAN1ORF13220P (81% identity) | CCWGG | PpuGBORF4748P |
| 1159 | DNA repair protein RadC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1636 | 94 aa conserved hypothetical protein | |||
| 1637 | R | Asp90McrB3P (16% identity) | PpuGBMcrBP | |
| 1638 | integrase family protein | |||
| 4749 | transposase-like protein TnpA3 | |||
| ??? | R | GloSZMcrBP (25% identity) | PpuGBMcrB2P | |
| 4751 | 537 aa hypothetical protein | |||