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Putative Helicobacter pylori OK113 RM systems
Ref: Yahara,K. et al. Mol. Biol. Evol. (2013) In press
REBASE ref # 15738
Complete sequence: 1,616,617 bp
GenBank #: AP012600
REBASE acronym: HpyOK113
Org_num: 3217
All begin HPOK113_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
444 | polyphosphate kinase | |||
445 | S | S.HpyOK13ORFSP (100% identity) | S.HpyOK113ORF446P | |
446 | M | M.HpyOK13ORFSP (100% identity) | M.HpyOK113ORF446P | |
??? | R | HpyOK13ORFSP (100% identity) | HpyOK113ORF446P | |
449 | 631 aa hypothetical protein | |||
801 | outer membrane protein HofF | |||
802 | S | S.HpyOK13ORFAP (100% identity) | S.HpyOK113ORF802P | |
803 | cadmium-transporting ATPase | |||
858 | thiamine phosphate pyrophosphorylase | |||
859 | R | HpyOK13ORFXP (100% identity) | HpyOK113ORF861P | |
860 | S | S.HpyOK13ORFXP (100% identity) | S.HpyOK113ORF861P | |
861 | M | M.HpyOK13ORFXP (95% identity) | M.HpyOK113ORF861P | |
862 | 228 aa hypothetical protein | |||
1447 | FAD-dependent thymidylate synthase | |||
1448 | S | S.HpyOK13ORFIP (100% identity) | S.HpyOK113ORF1449P | |
1449 | M | M.HpyOK13ORFIP (100% identity) | M.HpyOK113ORF1449P | |
??? | R | HpyOK13ORFIP (100% identity) | HpyOK113ORF1449P | |
1453 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
43 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | HpyOK44ORFLP (96% identity) | HpyOK113ORF44P | |
46 | adenine specific DNA methyltransferase | |||
??? | type IIG restriction-modification enzyme | |||
46 | M | M.HpyOK13ORFNP (100% identity) | GANTC | M.HpyOK113ORF46P |
??? | R | HpyOK13ORFNP (77% identity) | GANTC | HpyOK113ORF46P |
48 | carboxyl-terminal protease | |||
55 | 242 aa hypothetical protein | |||
56 | M | M1.HpyOK13ORFLP (100% identity) | CCTC | M1.HpyOK113ORF56P |
57 | M | M2.HpyOK13ORFLP (100% identity) | CCTC | M2.HpyOK113ORF56P |
58 | R | HpyOK13ORFLP (97% identity) | CCTC | HpyOK113ORF56P |
59 | type II DNA modification enzyme | |||
58 | type II DNA modification enzyme | |||
59 | M | M.HpyOki112ORF515P (99% identity) | GTSAC | M.HpyOK113ORF59P |
??? | R | HpyOK79ORFNP (100% identity) | GTSAC | HpyOK113ORF59P |
62 | proline permease | |||
102 | malonyl coenzyme A-acyl carrier protein | |||
103 | R | HpyOK13ORFPP (100% identity) | GATC | HpyOK113ORF104P |
104 | M | M.HpyOK13ORFPP (100% identity) | GATC | M.HpyOK113ORF104P |
105 | alpha-1,2-fucosyltransferase | |||
268 | exodeoxyribonuclease VII large subunit | |||
269 | M | M.HpyOK310ORFPP (100% identity) | TCGA | M.HpyOK113ORF269P |
270 | 155 aa hypothetical protein | |||
270 | 155 aa hypothetical protein | |||
271 | R | Hpy310ORF267P (97% identity) | CCGG | HpyOK113ORF272P |
272 | M | M.HpyOK95ORFBP (100% identity) | CCGG | M.HpyOK113ORF272P |
273 | ATP-dependent protease binding subunit | |||
319 | 293 aa hypothetical protein | |||
320 | R | HpyOK13ORFRP (96% identity) | CTNAG | HpyOK113ORF321P |
321 | M | M.HpyOki112ORF1850P (100% identity) | CTNAG | M.HpyOK113ORF321P |
322 | 122 aa hypothetical protein | |||
462 | outer membrane protein | |||
463 | M | M.HpyOK13ORFTP (100% identity) | ATTAAT | M.HpyOK113ORF463P |
464 | Type II adenine specific methyltransferase | |||
465 | 599 aa hypothetical protein | |||
466 | M | M.HpyOK13ORFKP (100% identity) | ACNGT | M.HpyOK113ORF466P |
??? | R | HpyOK13ORFKP (100% identity) | ACNGT | HpyOK113ORF466P |
469 | catalase-like protein | |||
485 | DNA gyrase subunit B | |||
486 | M | M.HpyOK13ORFUP (99% identity) | GTAC | M.HpyOK113ORF486P |
487 | R | HpyOK13ORFUP (95% identity) | GTAC | HpyOK113ORF486P |
488 | outer membrane protein | |||
680 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
??? | RM | HpyOK13ORFVP (100% identity) | HpyOK113ORF681P | |
684 | outer membrane protein HorF | |||
698 | 270 aa hypothetical protein | |||
699 | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.HpyOK113ORF699P |
700 | R | HpyOK13ORFWP (100% identity) | CCNNGG | HpyOK113ORF699P |
701 | 133 aa hypothetical protein | |||
917 | flagellar hook protein FlgE | |||
918 | R | HpyOK13ORFYP (100% identity) | GTNNAC | HpyOK113ORF919P |
919 | M | M.HpySORF4790P (98% identity) | GTNNAC | M.HpyOK113ORF919P |
920 | rep helicase, single-stranded DNA-dependent | |||
1045 | biotin carboxylase | |||
1046 | M | M.HpyOK13ORFZP (100% identity) | TCNNGA | M.HpyOK113ORF1046P |
??? | R | HpyOK13ORFZP (100% identity) | TCNNGA | HpyOK113ORF1046P |
1049 | 214 aa hypothetical protein | |||
1082 | 144 aa hypothetical protein | |||
1083 | M | M.HpyOki112ORF5935P (98% identity) | GCGC | M.HpyOK113ORF1083P |
1084 | flgM protein | |||
1164 | 222 aa hypothetical protein | |||
1165 | M | M.HpyOK13ORFCP (100% identity) | CATG | M.HpyOK113ORF1165P |
??? | R | HpyOK13ORFCP (100% identity) | CATG | HpyOK113ORF1165P |
1168 | serine acetyltransferase | |||
1383 | DNA polymerase I | |||
1384 | S | S.HpyOK13ORFEP (97% identity) | S.HpyOK113ORF1385P | |
1385 | RM | HpyOK13ORFEP (100% identity) | HpyOK113ORF1385P | |
1386 | 191 aa hypothetical protein | |||
1411 | 355 aa hypothetical protein | |||
1412 | M | M2.HpyOK13ORFFP (100% identity) | CCATC | M2.HpyOK113ORF1412P |
1413 | M | M2.Hpyfe88ORF155P (100% identity) | GATGG | M1.HpyOK113ORF1412P |
1414 | R | HpyOK13ORFFP (100% identity) | CCATC | HpyOK113ORF1412P |
1415 | outer membrane protein | |||
1432 | 122 aa hypothetical protein | |||
1433 | RM | HpyOK13ORFGP (97% identity) | HpyOK113ORF1433P | |
1434 | 535 aa hypothetical protein | |||
1469 | 67 aa hypothetical protein | |||
1470 | M | M.HpyOK13ORFJP (100% identity) | TGCA | M.HpyOK113ORF1470P |
1471 | R | HpyOK13ORFJP (100% identity) | TGCA | HpyOK113ORF1470P |
1472 | 177 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1317 | multidrug resistance protein | |||
1318 | M | M.HpyOK13ORFDP (100% identity) | M.HpyOK113ORF1318P | |
1319 | R | HpyOK13ORFDP (91% identity) | HpyOK113ORF1318P | |
1320 | biotin synthase | |||
1435 | 119 aa hypothetical protein | |||
1436 | R | HpyOK13ORFHP (100% identity) | HpyOK113ORF1437P | |
1437 | M | M.HpyOK13ORFHP (100% identity) | M.HpyOK113ORF1437P | |
1438 | DNA recombinase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
494 | glutamine synthetase | |||
495 | R | HpyOK13GmrSDP (98% identity) | HpyOK113GmrSDP | |
496 | 50S ribosomal protein L9 |